Thalassiosira pseudonana: THAPSDRAFT_32744
Help
Entry
THAPSDRAFT_32744 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_32744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_32744
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
THAPSDRAFT_32744
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
7444060
NCBI-ProteinID:
XP_002288744
JGI:
32744
UniProt:
B8BXC2
LinkDB
All DBs
Position
3:complement(<571802..>574023)
Genome browser
AA seq
712 aa
AA seq
DB search
YTPHVDSSALSHGLQTNRYYQGVYRSNRDSYNDGYVSIRQGDDRVAVVVQGSSDVNRAVD
GDIVAVELFSLDKWLGGEESSGVDRSKVEKLKQKGGNDNDGAGIAADTAEPTVKDIDNIT
EEVAVDEAGDLRRPTGKVVGIIRRNFHKNYCGSLCTIDDAAADAEEKSTHPHDIIAAKHE
REHPDGITSTVVFFSVDPRVPPILLRTTQRERLVGMRILVSMDSWPADSEYPLGHYVKTL
GVTGTKDTETQVLLQEFRIPCEPFPAKVLACLPPPDYKIELEPGRADLRHIPVLSIDPPG
CKDIDDALHCTELPNGNWQVGVHIADVTHYVEAGSAIDLEAANRSTSTYLVNKRLDMLPS
LLTTDLCSLKGNVDRFAFSVLWEVTPDADIVDVEFKKSIIHSIAALTYQQAQSLIDKPDE
DCKDDIQVGAVKRLASLARKFRARRINAGALTLASPEVKFVLDSESLNPTDVQAYTLFEA
NAVVEEFMLLANVTVAKKILRHYPTLSILRRHPAPNRSMFDSLMRKAKTQRVSICIDDSK
KLADSLDEAGRTFKDPYLDQLLRILSTRCMSPAQYFCSGEYQAKDWHHYGLAAPVYTHFT
SPIRRYADVCVHRLLAAAIGVSPLPVFLSSKSYLHDLAANMNRRHRAAQLAGRASVQLHT
LIFFSGGEDGNEGGGTKEEDAYVLDVETAENTEPSFTVMVPRYGIEGRVRLS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
tatactcctcatgttgattcatcggcactttctcatggacttcaaaccaaccgatactat
cagggtgtataccgatcaaaccgtgattcgtataatgatggatacgtgtcgattcgtcag
ggagacgatcgtgttgccgtggttgttcagggaagcagtgatgtgaatcgtgctgtggac
ggggatattgtcgcagtggagttgttttcgctggacaaatggttgggaggagaagagtcg
agtggtgtcgacaggagtaaagtggagaagttgaaacaaaaggggggcaacgataacgac
ggtgctggtattgcagcagatacagcagagccaactgtgaaggatattgacaacatcaca
gaagaggtggccgttgatgaggcaggggatttgcgtcgtccaacgggaaaggtggttgga
ataatccgcagaaactttcacaagaactattgtggatcactttgcactattgacgatgct
gctgccgatgccgaggagaaatcaacccatcctcatgacatcattgctgccaagcacgaa
agagagcatcctgatggaatcacttcaactgtcgtcttcttctcagtcgaccctcgtgtt
cctcctattctacttcggacaacacaacgtgagcgtctcgtagggatgcgtattttggtt
tcaatggattcttggccagctgattcggaatatccacttggtcactacgtgaagacgttg
ggtgtaactggaacgaaggatacagaaacacaagtcttgttgcaggagtttcgcattcct
tgtgagccgtttccggcaaaggtactcgcttgcctcccgcctcctgactacaaaattgag
cttgaacctgggagagcagatctccgacacatccccgtgctctcgattgatccacctggg
tgtaaggacattgacgatgcgctgcattgtactgaactaccaaatgggaactggcaagtg
ggtgttcatattgctgatgtgacacattacgtggaagcgggaagtgcaattgatttggag
gcagcgaatcgttcaacctcgacgtacttggtgaacaagaggttggatatgttgccatcg
ttattgacgaccgacttgtgtagtttgaagggtaatgttgatcgctttgccttctctgtg
ttgtgggaagtcactcccgatgctgacatcgtggatgtggagtttaagaagagcatcatc
cattcaatcgctgcactgacttaccagcaggcacagtcactcattgacaagccggatgaa
gactgcaaagacgatattcaagttggagctgtgaaacgattggcgtcgttggcaaggaag
tttcgggctaggcgaataaatgctggagcactcacccttgctagccctgaggttaagttc
gtcttggacagtgaatctttgaacccaaccgatgttcaagcctacacactctttgaggcc
aatgcagttgtggaagagttcatgcttcttgcgaacgtcaccgttgccaagaagatttta
cgccattatcctactctttccatccttcgtaggcatccagctcccaaccgcagcatgttt
gatagtctcatgcgaaaagcaaagactcaacgagtatcaatctgcatcgacgactcaaag
aagcttgccgattctctggacgaagctggtagaacttttaaagatccctacctcgaccaa
cttctccgtatcctctccactcgctgcatgtctcctgcacagtacttctgtagtggggaa
taccaagcaaaagactggcatcactacggtttggcagctccagtttacactcactttaca
tctccaattcgccgttatgcagatgtatgtgtacatcgtctcttggcagctgcaataggt
gtgtcgccacttccagtgttcctgtcgtcaaagtcatatctgcatgatttggcggcaaac
atgaaccggaggcatcgtgccgcacaactggctggaagggctagtgtgcaacttcacact
cttatcttcttctccggtggtgaagatggaaacgaaggaggaggaacaaaggaagaggat
gcatatgtcttggacgtggagacggctgaaaataccgaaccttcgtttacagtaatggtg
ccgcggtatggaattgaaggtcgtgttcgcctatca
DBGET
integrated database retrieval system
