Thalassiosira pseudonana: THAPSDRAFT_337
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Entry
THAPSDRAFT_337 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
tps
Thalassiosira pseudonana
Pathway
tps03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THAPSDRAFT_337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_337
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
THAPSDRAFT_337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
MMR_HSR1
GTP_EFTU_D2
Ant-IIb_sub-bd
Motif
Other DBs
NCBI-GeneID:
7441940
NCBI-ProteinID:
XP_002288428
JGI:
337
UniProt:
B8BYC2
LinkDB
All DBs
Position
3:1418296..1419765
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AA seq
428 aa
AA seq
DB search
MVILGHVDAGKSTLTGRLLLQLNHVSQRQLQKYQKAANNIGKSSFALAWFTDEDESERER
GVTMDVGTKFARTNNFDFTILDAPGHKDFIPNMISGAASADCGLLVIAATTGEFEAGFAR
QTREHIVLSRGLGVSQFVVAVNKLDAAEPPWDEGRFEYIKALVLPFLISSGFKEKRITFV
PVSGLTGVNVARDTSAKEDEEGWKALKKWYNGPTLLEALDGLVPAKREFEKPLRLIVTDM
SSEGKNVTVCGRVVQGFVRMGDGVLVLPVGDAANVEIEDIPELQNCALAGDTVEVTLAGI
DAARLSPGCVICHPHPSLRPQVKRKFEARVMVMEHLAVPVIRGSQALFHMHSIDVPAVLN
KLISSKKRGEANPRPNPRVLTGGVEATVEITLNERLVLEEYSECKSLGRFVLRRGGDTIA
VGLIEKVL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtaatcctcggacacgtcgacgccggcaaatccaccctcacgggccgactcctcctc
caactcaaccacgtatcccaacgacaactccaaaaataccaaaaggccgccaacaacatt
ggcaaatcgtcatttgcactggcgtggtttacagacgaggatgagtccgagagggaaagg
ggtgttaccatggatgtggggacgaagtttgcacgaacgaataattttgactttacgata
ctggatgccccgggtcacaaggactttataccgaatatgattagtggtgcggcgagtgcg
gattgtggtttgttggtgattgcggctactacgggagagtttgaggctggctttgcgaga
caaacgagagagcacattgtgttgtcacgtgggttgggtgtttcgcagtttgtagtggca
gtgaacaagttagatgctgccgagccaccgtgggatgagggaagatttgagtacattaaa
gctttggtgttgccgttcttgatatctagtggattcaaggagaagcggattacgtttgtt
cccgtgagtggactgacgggtgtcaatgtggctagggatactagtgcaaaagaagacgag
gagggatggaaagcattaaagaagtggtataatggaccgacgttgctagaggcattggat
ggattagtccctgccaaacgggagtttgagaagccattgcgattgattgtcacggacatg
tcttcggagggaaaaaatgtaactgtctgtggacgagttgtgcaagggtttgttagaatg
ggtgatggagtattggttctgccagtgggagatgctgcaaatgtagagattgaggatatt
ccagaactacaaaactgtgcgttggctggtgatacagtagaagtgacactcgctggtatt
gatgctgctcggctgagtccagggtgtgttatttgccatcctcatccttcgctacgacca
caagtgaagcgaaaatttgaagctcgggtaatggtgatggagcatttagcagtacccgtc
attcggggttcgcaggcgttgttccacatgcacagcattgacgtgcctgctgttttaaac
aaactgatatcgtcgaagaaacgcggagaagcaaatccacgtcccaatcctcgtgtgttg
acgggtggtgttgaagcaacggtggagattacgttgaatgagagactcgtgttggaagag
tattcagaatgcaaatcgttggggcgattcgtattgcgacgtgggggagacacaattgca
gtgggtttgattgagaaggtattatag
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