Thalassiosira pseudonana: THAPSDRAFT_34006
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Entry
THAPSDRAFT_34006 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_34006
Enzymes [BR:
tps01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
THAPSDRAFT_34006
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
THAPSDRAFT_34006
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
Methyltr_RsmF_N
RsmF-B_ferredox
PCMT
TRM5-TYW2_MTfase
FtsJ
Methyltransf_31
FTA4
Fibrillarin
Motif
Other DBs
NCBI-GeneID:
7447285
NCBI-ProteinID:
XP_002290080
JGI:
34006
UniProt:
B8C1V6
LinkDB
All DBs
Position
5:290229..291803
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AA seq
494 aa
AA seq
DB search
MSSDEEDADDDEFDTKNNSDEDEESDDEMEVERQSKLIDAEMLAEQEEAEVEMRRTIAQQ
TSVYHLPTAEEIAEDENRVVPPSELRARIEDVLEVLADFKTRREPGRSRSDYIERLAQDM
AELFGYLQELVDYFLSMFGPNECLEFLEASDKPRPLVVRVNTLKARRKDLAAALMKRGVR
LDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALGPQPGDRVLDMSAA
PGGKTSYVSQLMKNKGVVIANDLKPERQKATVANLHRLGVRNVVTCVYDGRKIGNQLRNS
FDRILLDAPCSGLGVISRDPSVKVQRTIPDVQRCAHLQKELLLAAIDALNAKSKKGGGCM
VYSTCSVAVAENEEVVNYLLSKRDVKLVETGLDFGKPGFTRFEHKRFHPSLALTRRFYPH
VHNMDGFYVAKIQKLSDKKKGEEDKNAVSEENVNEVEADGKNEAEEVILEKKQVVKVDGN
KHSTKKNDKKRGKA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgacgaagaagacgcagacgacgacgagtttgataccaaaaacaactctgac
gaagacgaggaatccgatgacgaaatggaagtagagcgtcagtccaaactaatcgacgca
gagatgctagcggaacaagaagaagccgaggttgaaatgcgtcgtaccattgctcaacag
acttcagtgtatcacctccccacggcagaggagattgccgaggacgagaatcgtgtagta
ccaccttccgaactacgtgctcgtattgaagacgtgttggaggtactagccgactttaaa
acgaggagggagccaggacgtagtcgctccgattacattgaacgattggctcaggatatg
gccgaattgtttggctatttgcaagagttggtggattacttcttgagtatgtttgggccg
aatgaatgccttgagtttttggaggctagtgataagccgaggcctttggttgttagagtg
aatactctcaaggcgaggaggaaggatttggcggctgcgttgatgaagcgtggagttagg
ttggaccctttggctccgtggagtaaggttgggttgaagatatacgagagtacagttcct
attggagctactcctgagtatttggctggacactatatgcttcagagtgctgcgtccatg
tgtccagtgatggctttgggacctcagcctggtgatcgtgtattggatatgtcggctgct
cctggtggaaagacttcttatgtctctcagttgatgaaaaacaagggggtggttattgcc
aatgacttgaaaccggaacgtcaaaaggctacagttgcaaatctccatcgtctaggagta
cgaaatgtagtcacgtgtgtctacgacggacgaaagattggaaaccaacttcgcaactcc
tttgatcgcatcttgttggatgccccatgcagtggactcggtgttatttctcgtgatcca
agtgtcaaagttcaacgtaccattcccgacgtacaacgttgtgctcatttgcagaaagag
ctgttattggcagcgattgatgctttgaatgcaaagagtaagaaaggaggagggtgcatg
gtctactctacctgttcggtggccgtagcggagaatgaggaggtggtgaactacttgttg
tccaaaagggatgtgaagcttgttgagactgggcttgattttggcaagccaggattcacc
cgctttgagcacaagcgattccatccctcattggctctcactcgtcgtttctacccccat
gtccacaatatggatggtttctacgttgccaagatccagaagttgagtgataagaagaaa
ggagaggaggataagaatgctgtttctgaggagaatgttaacgaggtagaggctgatggt
aaaaatgaagctgaggaagttatcttggagaagaaacaggttgtgaaggtagatggtaac
aagcattcaacgaagaagaatgacaagaaacgtggtaaagca
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