Thalassiosira pseudonana: THAPSDRAFT_34227
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Entry
THAPSDRAFT_34227 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
tps
Thalassiosira pseudonana
Pathway
tps03015
mRNA surveillance pathway
tps04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THAPSDRAFT_34227
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
THAPSDRAFT_34227
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tps01009
]
THAPSDRAFT_34227
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_34227
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_34227
Protein phosphatases and associated proteins [BR:
tps01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
THAPSDRAFT_34227
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
THAPSDRAFT_34227
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
THAPSDRAFT_34227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Na_H_Exchanger
Trp_repressor
Motif
Other DBs
NCBI-GeneID:
7451793
NCBI-ProteinID:
XP_002290606
JGI:
34227
UniProt:
B8C2C0
LinkDB
All DBs
Position
5:complement(668712..670085)
Genome browser
AA seq
423 aa
AA seq
DB search
LPALRDAPPNKREELFKLKLQLCGVIFSFDDPTSDKRGKDMKRQTLLELVDYVNTPAGQK
IFTESVMSDLMAMVSANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSE
VNAKAAKKYVDQRFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNVFY
RFVYETERHNGIGELLEILGSIINGFAIPLKKEHLQFLVRALIPLHKPKCVGLYHQQLSY
CIIQYVEKDADTATPILNGFFKCWPWSCSGKQVLFLNELEEILELLGADQLNQISKTLFT
NLARCLDSDHFQVVERALFLWNNEHLVNSGCLSRLNAQTVLPIIYGPLYKNSSGHWNATV
EGLAQNVLKMYMEYDLVLYDQCTTAYFKEEEDAKKKIQAIADRWQVIEEMAETNKRQRMI
TAA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
cttcctgccttgagggatgcccctcctaacaagcgtgaggaactcttcaagttgaagctt
caactttgtggtgtcatcttttcgtttgatgatcccacctctgacaagcgtggaaaggat
atgaaacgccagactttgcttgaattggttgactacgttaacactcctgctggacagaag
atcttcactgaatccgtcatgtctgacctcatggccatggtgtccgccaacgtatgccgc
gcccttcctcccgctactgacgactttgatcctgaagaggatgagccagtcctcgaacct
gcatggcctcaccttcaagtcgcctacgagttcttccttcgtttcatcgtgagctctgaa
gtgaatgccaaagcagccaagaagtatgtcgaccaacgcttctgccttcagcttgtggag
ttgtttgattctgaggatcctcgagaacgcgactacctcaagacgattcttcatcgtatc
tacggaaagttcatgtctcacagatcttttatccgcagggcaatctccaatgtcttctac
aggtttgtgtacgagacggaacgtcacaatggtatcggtgaattgcttgagattcttgga
tccatcatcaacggatttgctatccctctgaagaaagagcatttgcaattccttgttcgt
gccttgattcctcttcacaagcccaagtgtgttggactctaccaccagcagctgtcttac
tgcatcatccaatacgtcgagaaggatgcagacaccgctactcccatcctcaatggcttc
tttaaatgctggccttggtcgtgctctggaaagcaggtgttgtttttgaatgagttggag
gagattcttgagttgctcggagccgatcaactcaaccagattagcaagacgttgttcacc
aatcttgctagatgtcttgactcggatcacttccaagtggtggaacgagctctcttcctg
tggaacaatgagcaccttgtgaacagtggttgcttgtcgaggttgaatgctcagactgtg
ttgcccataatctatggccctctctacaaaaacagctctggacattggaatgccactgtt
gagggattagcgcagaatgtactgaagatgtacatggaatacgatcttgttctatatgat
caatgcactaccgcgtactttaaggaggaagaggatgcaaagaagaagatccaggctatc
gcggatcgttggcaagtcattgaggagatggcagaaactaacaagcgtcagagaatgatt
accgctgcttag
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