Thalassiosira pseudonana: THAPSDRAFT_34228
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Entry
THAPSDRAFT_34228 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K18464
WASH complex subunit strumpellin
Organism
tps
Thalassiosira pseudonana
Pathway
tps04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
THAPSDRAFT_34228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_34228
Membrane trafficking [BR:
tps04131
]
Protein recycling
Others
WASH complex
THAPSDRAFT_34228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Strumpellin
WSLR
Motif
Other DBs
NCBI-GeneID:
7450048
NCBI-ProteinID:
XP_002290249
JGI:
34228
UniProt:
B8C2S8
LinkDB
All DBs
Position
5:1080044..1083960
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AA seq
1161 aa
AA seq
DB search
FLSNDNLCGRTLLELVGRGHSILADIKILSEREPSQDTDDVKKYVPFLFDFSYLHNPQEW
EATPAAESSESLLELEREFAVNHRKAIEEFYELFYSIYDYQVALNQFSSDLTKGFFIQYT
VESVLLDLEGRALLCEAVWLYGVMLMLMERLLPGPVRERLIIAYFRFCGRDGDISQIDTI
CKLCKSTGIQPPKSTDSVNMSEQLSHKYPMDEDKLFNRYPLPVDLVRNIVGCLISDDIYQ
QSSAFPNIDHRSTRLSRQASMLYVIMYFDPIVLRDETSKLREIVDKYFLDTWVIHIYAGL
TADLSLEWDKFPAAKSALDNVLREDNVKRMHIGNAKLIGQCMAELRAYLTMGILTDRFVL
DNRHDLLNCLRRCNIAAKWRILHRRTSNPIFYDIVCFAVNDTHLVSLLLLSSQLEMQLKD
IFQQLLEKKENIWISCRSKAGKMMDDLAHYFKGDQTLARVSRHDGLITWFTAMGEEIRAL
TYEDGDHFTVTGRKIQLCVQALEEVEQYDSIDRDVQVKTFLVEARGLLLQMARAVGINED
ICEDIRWISDMSYGIESVKSYVKIIHSRVTKDPSNVNLLQGFFMKLSSSLDAPVERLKQL
NSPDATRVTDYYSLQLVSFVRKVLEIVPISVFGLVVQMSDIIERRLLRLPKKVAADQLIA
FSQTGERYKLAMMAHEISIFADGILAMENSFIGGKEVNPRKLLDDGLRKEMVQHVSELMN
NLLQFDFSADTETITSMTNHQSAAMRSLSSLSSRLEGFQSALECVEDYVCINSLKMWHGE
MSRIINYNVEQEVNKYLLKKVLDSDSKFQLRVIPIPRFARTPNEPTCINFMGRILSMLLK
ITDTQYTTYSLERIGWFLGDGTEVCGLKNVSLLRKAIGIYGLTGVDRLLCYRILHELHRF
VKFFRNNVSKQGVLFEQLRDELYPEWKTPHNVVSIYASGSKKTEMLMLPMLTCFRRVGQA
QLLRRMIRFELQRCARVDAKELQHSVSTLNASLLSTQQRDGPEETKMICDFTTAVGLGNP
LDTVFMATNPLEGLPVLLLFFVITYVPKLSYDSNYGSLAKVKGGYPIDGCPIVAGTASLL
KQFHPSYTKSFLAYVGQFIRVSIQTYAKRRQGKKEEVSRLAADLKNSIVFMNQFCELASL
PRSSLFEHVPEYLMEMCSDLP
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttcctctcgaatgacaatctctgcggacgtactcttctcgaactagtcggtcgaggccat
tccatcctcgcagatatcaagatattatcggaacgtgaaccaagtcaagatacagatgat
gtgaagaagtacgttccatttctgtttgacttttcttacctccacaatcctcaagaatgg
gaggcgacacccgctgccgagtcttcagagagtcttctcgagttggaacgtgaatttgca
gtgaatcatcgcaaggctattgaagagttctatgagctcttttactcaatttatgattat
caggtggctttgaatcagttctcaagtgatttgaccaagggattcttcattcagtatacg
gtggagagtgtactgttggatttggagggacgtgccttactttgcgaagcagtttggctg
tacggagtcatgttgatgcttatggaacgtctgcttccgggaccagtcagagaaaggctc
atcattgcgtactttcgcttctgtgggagagatggagatatctcacagattgataccatt
tgcaagttgtgtaaatccactggcattcaacctccaaagtcaacggactctgttaatatg
tcagagcaactctcacacaaatatccaatggacgaagacaaactcttcaaccgatatcca
cttccagtagacttggttcgcaacatcgttgggtgtttgatatcagacgatatctatcaa
caatcatctgcgtttcccaacattgaccaccgatcaactagactctctcgtcaagcatca
atgctatacgtgatcatgtatttcgatcccatcgtgcttagagatgagactagcaagcta
cgtgaaatcgtggacaagtacttcctcgacacatgggtaatacacatctacgctggtctt
actgccgatttaagtttggaatgggataaatttcctgcggcaaagtcggcgttggacaat
gtgctacgggaggacaacgtgaagaggatgcacatcgggaacgccaagctgattggtcag
tgtatggcagagcttcgcgcatacttgacaatgggtattctgaccgacaggtttgtactc
gacaacaggcacgatttgctcaactgcttaagaagatgcaatattgctgcgaaatggagg
attcttcatcgtaggacgtcgaacccaatcttctacgatatcgtttgctttgcagtgaac
gatacacacttggtgtcacttctgcttttatcttcccaacttgaaatgcaactcaaagat
atcttccagcagttacttgagaagaaggagaacatttggatcagttgccgtagtaaagcg
ggcaaaatgatggacgatcttgcacactatttcaaaggagatcaaacactggcacgagtt
tctcgacatgatggtctcattacttggttcactgccatgggagaagaaatccgtgcgttg
acatatgaggatggagatcatttcacagtcactggcaggaagatccagttgtgtgtgcag
gctttggaagaagtggagcaatatgactcgattgatagagacgtccaagtaaagactttt
cttgtggaggcccgtggtctactacttcaaatggcgagagcagtgggcattaacgaggat
atatgcgaagatatacggtggatctctgacatgtcctatggcattgaaagtgtcaaatcg
tatgtcaaaatcattcactccagagttaccaaagatccgtcaaatgtcaatctgctccaa
ggctttttcatgaaactatcaagctcactggatgctccggtagaacggctgaaacaactt
aattctcctgatgcaacgcgagtcactgattactattctctgcagctcgtctcgtttgtg
agaaaggtcctggagatagttcccatttctgtatttggactggtggttcagatgagtgat
atcattgaacgtcggctattgcgtctgccaaagaaagttgctgctgatcagctcatagca
ttcagtcagacgggcgaacggtacaaactagccatgatggctcatgagatatcaatcttt
gctgatggcattctcgcaatggagaattcctttattggaggtaaagaagtcaatcctcgt
aagctgttggacgatggtctgagaaaagagatggtgcagcatgtttcagagttaatgaac
aatctactccagtttgatttctcagctgatacggaaacaataacttccatgacaaatcat
cagagtgccgcaatgagatccctctcctcgctttcgagtcggttagaaggatttcagagt
gctcttgagtgtgtagaggattacgtttgtatcaatagtctgaagatgtggcatggggag
atgtcaagaattatcaattacaacgttgagcaagaagtgaacaagtacttgctgaagaag
gttcttgattcagactcaaagtttcagttgagggtgattcctattccacgctttgcacga
actccaaatgaacctacttgcatcaacttcatgggacggattttgtcgatgttgctgaag
attacagacacacaatacaccacatactcgttagaacgaatcgggtggtttctaggggat
gggacggaagtatgcgggctaaagaatgtatctctactgcggaaagccattggcatctac
ggcttgactggagtcgatagactgctttgctacaggatactacacgagcttcatcgcttc
gtcaagttctttcggaacaacgtgtcaaagcaaggtgtgctttttgaacagctacgagac
gagttatatccggagtggaagacaccccacaatgtcgtttcgatctatgcttctggatca
aagaagacggagatgctaatgctcccaatgttaacttgtttcagacgagttggacaggct
caacttcttcggcgaatgattcggtttgaacttcaacgatgtgctagagtggacgcaaag
gaattgcagcattctgtatcgacgctgaatgcctcattgctctctacccaacaacgcgac
ggacctgaagagacgaagatgatttgcgatttcacgacagcggttgggctcggcaatcca
ttggacacagtctttatggcaacgaatccactggaaggattgccagttctgcttttattc
tttgtcattacctatgtcccaaagctctcctacgattctaattatggatctctagccaaa
gtgaagggcggatatcctattgatgggtgtccaattgttgcgggaacggcgtctctcttg
aagcagttccatccttcctataccaagagttttctagcatacgtcggtcaattcattcga
gtgtctatacagacctacgcaaagaggagacaaggcaaaaaggaggaggtttcacgtctt
gctgctgatctgaagaatagcattgtctttatgaatcagttttgtgaattggcaagtctt
ccgcgatcttcactgtttgagcacgtaccagagtatttgatggagatgtgtagtgatttg
ccttag
DBGET
integrated database retrieval system
