Thalassiosira pseudonana: THAPSDRAFT_34332
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Entry
THAPSDRAFT_34332 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10865
double-strand break repair protein MRE11
Organism
tps
Thalassiosira pseudonana
Pathway
tps03440
Homologous recombination
tps03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THAPSDRAFT_34332
03450 Non-homologous end-joining
THAPSDRAFT_34332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_34332
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_34332
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
THAPSDRAFT_34332
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
THAPSDRAFT_34332
BRCA1-C complex
THAPSDRAFT_34332
NHEJ (non-homologous end-joining)
MRX complex
THAPSDRAFT_34332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mre11_DNA_bind
Metallophos
HSL_N
Motif
Other DBs
NCBI-GeneID:
7448190
NCBI-ProteinID:
XP_002290809
JGI:
34332
UniProt:
B8C3H0
LinkDB
All DBs
Position
5:complement(1703135..1704959)
Genome browser
AA seq
472 aa
AA seq
DB search
DDNTLRVLLSTDNHLGYLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPS
RRTLHKTMEILRRYCMGGESVGFQIVSDQKECLRSVVTGRANYEDEYYSVDMPIFAIHGN
HDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMR
DERLNRMWQGKKVKFLRPEEDDNRWFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWG
HEHECLITPQESLVGTFRISQPGSSVATSLTQGEGRQKHVGILDIRGQQFRLKSIPLGSV
RGFAIGDVSLTELAEGGTVLDIEDPKLEERMGDVLAAEVENLVSYFECMSVENYTLQSPE
QVLVRLKVEHSGFTTLNNQRFGSRFVGEVANPSDILLFHRRRQAENTTAKGAATKKKRAA
AGMYDPTEPEELEEVNVEDLVNENLFNMDKKLELLTEREMGEGMLSFQLLVC
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gacgacaacaccctccgcgtcctcctctccaccgacaaccacctcggctacctcgaacgc
gatcccatccgaggcctcgactccttcgccgcctttgaagaagtcttatccctcgctcgt
tctcaaaaagccgatttggtgttgttatcgggggatgtctttcacgataacaagccttcg
agacggacattgcacaagaccatggagattttgagacggtattgcatgggtggggagagc
gtggggtttcagattgtgagtgatcagaaggagtgcttgaggagcgttgttactggacgg
gcgaattatgaagatgagtattactcggtggatatgccgatttttgcaatccatgggaac
catgatgatcctacacgtgatggggggacggagctgttgagtgctttggatttgctgagt
gtttcgaacctcatcaattactttggacggcaggatcaagtggataacgtgcaagtgtcg
ccggtgttactgcaaaagggtggaacgaaggtggcattgtacggaatggggagtatgaga
gatgagaggttgaataggatgtggcaggggaagaaggtcaagtttttgaggcctgaggag
gatgacaatcggtggttcaacatctttactcttcatcagaatcgtgatttgggacgagga
tccaagaactgtgtgcatgagagcatgatccccgaatggatggatcttgtagtgtggggc
catgagcacgaatgtctcatcacccctcaagagtctctcgtgggtaccttccgtatctca
cagcctggatccagtgtagccacctcgttgactcagggagaaggacgtcagaagcatgtg
ggtattcttgatattcgtgggcagcagtttcgtttgaagtccattcctttgggaagtgtg
aggggttttgctattggagatgttagtttgacggagttggcggagggtggaaccgtatta
gatattgaggaccccaagcttgaggaaaggatgggagatgtgttggctgcggaggtggag
aatttggtgagttactttgaatgtatgtcagtggagaactacactttgcagtctcctgag
caggtgttggttcgtctcaaggtggagcattctggctttactacgctgaacaaccagaga
tttggctccaggttcgttggagaggtggcaaatccctcggacatcctcctctttcaccgt
cgtcgccaagctgagaatacaactgcaaaaggtgcagcgacaaagaaaaagcgagctgct
gctggtatgtatgatcccactgagcctgaagagttggaggaagtgaacgtagaagatctc
gtcaatgagaacttgttcaatatggataagaagcttgagcttcttactgagagggagatg
ggtgaaggtatgttgtcatttcaattgttagtatgttaa
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