Thalassiosira pseudonana: THAPSDRAFT_34591
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Entry
THAPSDRAFT_34591 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12849
pre-mRNA-splicing factor 38A
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_34591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_34591
Spliceosome [BR:
tps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
THAPSDRAFT_34591
Complex C
U4/U6.U5 tri-SnRNP related factors
THAPSDRAFT_34591
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
7451139
NCBI-ProteinID:
XP_002291343
JGI:
34591
UniProt:
B8C555
LinkDB
All DBs
Position
6:complement(347891..348391)
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AA seq
167 aa
AA seq
DB search
MANVTDPLAHSVHGTNPQNLVEYITRQKIYDSLYWKEECFGLSASDVATKATDLKALGGS
YGGNNKPTRFLCLALKLLQIQPEEGIVEEFLENEEFKYVRALGAFYLRLTGRPAEIYELI
EPLFNDFRKLRFRESTGWKVTYMDELADELLTSDRYCGIALPHLPKR
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgtcaccgaccctctcgcccactccgtccacggaaccaacccccaaaacctc
gtcgaatacatcacccgtcaaaaaatctacgactctctctactggaaagaagaatgcttc
ggcctctccgcctccgacgtggccaccaaagcaaccgatttaaaagcattgggtggtagt
tacggagggaataataaacctaccaggttcttgtgcctggcgttgaaattgttgcagatt
cagccggaggaggggattgtggaggaatttttggagaatgaggaattcaagtatgttaga
gctttaggggcgttttatttgaggttgacgggaaggcctgcggagatttacgaattgatt
gaaccgttgtttaatgactttagaaagttgaggttcagagagtcgaccgggtggaaggtt
acgtatatggatgaattggcggatgagttgttgacttccgataggtattgtgggattgca
ctgccccatttgccaaagagg
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