Thalassiosira pseudonana: THAPSDRAFT_34620
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Entry
THAPSDRAFT_34620 CDS
T01078
Name
(RefSeq) predicted protein
KO
K17917
sorting nexin-1/2
Organism
tps
Thalassiosira pseudonana
Pathway
tps04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
THAPSDRAFT_34620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_34620
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tps04990
]
THAPSDRAFT_34620
Membrane trafficking [BR:
tps04131
]
Endocytosis
Macropinocytosis
Sorting nexins
THAPSDRAFT_34620
Domain-containing proteins not elsewhere classified [BR:
tps04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
THAPSDRAFT_34620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
Vps5
LXN
Motif
Other DBs
NCBI-GeneID:
7442335
NCBI-ProteinID:
XP_002291311
JGI:
34620
UniProt:
B8C4Z2
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All DBs
Position
6:complement(187325..188740)
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AA seq
381 aa
AA seq
DB search
MNTLSHPEDSIDYITVSDPVIHADGMNKYTSYRVDCPADYPFLQNNQSPSSVLRRYSDFL
WLYERLQKERAGSIVPPIPEKQAVSRFSPEFVEERRGALERFLRRVVIHPELQDTSCLQT
FLRADDLSFQHAKSLSEKLDSSQHNGLDMSASLGGAGAFNLTPKNAAGIKKYIEALAIQM
KRVSNQASGLVKKSREIANGLFEFGLAFHQLGQSEGEVLGSKLQLVGGTAETLSGMAANQ
ADQELKRLGEPFRDYLKIIQAVKLALGRRHDKRVSYTALLHEIQTREINLHRLRMTPGSE
GKAYSIEMSLQRYQAAAEVAREEYAECSQRVLREVDRFKREKAEEMKLVVLNFIMLEIEV
NRNMERVWGELVPKLEGDNGV
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccctctcccaccccgaagactcaatagactacatcaccgtgtccgatccagtc
atccacgccgatggtatgaacaagtacacttcgtacagagtggattgcccagcagactac
ccattcctgcaaaacaatcaatccccatcctcggtgctacgacgctactctgactttcta
tggttgtacgaacgtcttcagaaggaaagggcggggagtattgtgcccccgattccagag
aaacaggccgtgagtcggtttagtccggagttcgtggaggagagacggggcgctctagaa
agattcctccgaagagtcgtcatccacccagaactccaggacacctcctgtctccagacc
ttcctccgagccgacgacctctccttccaacatgcgaaatctctctctgaaaagctagac
tcttctcaacataatggattggacatgtcggcatctctagggggagcgggggcattcaat
ctaactcccaagaatgctgcggggattaaaaagtatattgaagcgttggcgatacagatg
aagcgggtgtcgaatcaggcttcgggattagtaaaaaagtctagagagattgccaatgga
ttgtttgagtttggattggcgtttcatcaactcggtcagagtgagggagaagtactgggg
agtaagctgcaattggtgggagggacagcggagactctgtcgggaatggcggcgaatcag
gcggatcaagagctgaaacggttgggagagccttttagagactatctcaagattatccag
gcagtcaagttggcattgggcagaaggcatgataaaagagtttcgtacacggcgttgttg
catgagattcagacacgagagataaacttgcatcgattgagaatgactcctggatcggag
gggaaggcatactctatagagatgtccttgcagcgataccaagcagctgccgaggtggct
cgtgaggagtatgcagagtgttctcaacgtgtattacgtgaggtagatcgtttcaagagg
gagaaggccgaggagatgaagctggttgtgttaaatttcatcatgttggagattgaggtg
aataggaatatggaacgtgtttggggggagttggtaccgaagttggagggagataatgga
gtg
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