KEGG   Thalassiosira pseudonana: THAPSDRAFT_35189
Entry
THAPSDRAFT_35189  CDS       T01078                                 
Symbol
DPO1
Name
(RefSeq) DNA polymerase
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03030  DNA replication
tps03410  Base excision repair
tps03420  Nucleotide excision repair
tps03430  Mismatch repair
tps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    THAPSDRAFT_35189 (DPO1)
   03410 Base excision repair
    THAPSDRAFT_35189 (DPO1)
   03420 Nucleotide excision repair
    THAPSDRAFT_35189 (DPO1)
   03430 Mismatch repair
    THAPSDRAFT_35189 (DPO1)
   03440 Homologous recombination
    THAPSDRAFT_35189 (DPO1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tps03032]
    THAPSDRAFT_35189 (DPO1)
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_35189 (DPO1)
Enzymes [BR:tps01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     THAPSDRAFT_35189 (DPO1)
DNA replication proteins [BR:tps03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    THAPSDRAFT_35189 (DPO1)
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      THAPSDRAFT_35189 (DPO1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     THAPSDRAFT_35189 (DPO1)
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2 REV3_N divDNApol POL3_N
Other DBs
NCBI-GeneID: 7442345
NCBI-ProteinID: XP_002291074
JGI: 35189
UniProt: B8C5U2
LinkDB
Position
6:<947170..>950751
AA seq 999 aa
GAVPVIRLYGVNETGNSVAVFIHGFTPYGYFALPRGLRAKLGSQFGKGLQVNGGNGQQPQ
ACLGVQFLKDRQSIMGYDPSHTKFLKVYLGMPGMIPKLKSIMEEGLVLPGIVRVDANGNS
VGVNESMIFQPYECNVPFVLRYMIDRDITGASWLSLPKGTYRLRQTENEKGTHCQIEADI
CFNEIIPRKPEGEWSKVAPLRILSFDIECQGRKGYFPEAEHDPVIQIANCLSVYGDKAPI
VQNIFTLKGCLPIVGAQVISSETEQEMLLKWRTFLHASDADIFTGYNVQNFDIPYLLDRA
EALWKKNDPKLRIFTQWGRVKNTQTKKRQQMFQSSAYGRRENTETTIEGRVIFDMLPYMQ
RNHKLSSYSLNSVCAEYLSQQKEDVHHSIISDLQNGTDADRHRLAVYCLKDALLPQRLMD
KLSVLINYVEMARVTGVPVSFLISRGQQIKVFSMILRKCRDVNLVVPTLRKSGAGADEGY
EGATVLDPIKSYYEVPIATLDFASLYPSIMQAYNLCYSTMVSQHEASKIDPSKYKRSENG
HTFVHSNVKKGILPIILEELLSARKRAKKDMKNAPNDFEKSVQNGRQLALKVSANSVYGF
TGAGVGQLPCVPIASSVTAYGRFLLEKTKAYVEEHYTVAHGYKHNAKVVYGDTDSVMVKF
GTATVAETFPLAIEAAEKCSAIFPDPILLEFEKVYYPYLLMNKKRYAGLMWTQVEKYDYM
DTKGLETVRRDNCALVREVIQTSLNKIIIERNVPGAIDYVKSQIADLLQNKMDISRLVIT
KSLGGKAEDYKVKQAHVELAARMRKRDAGSAPQMGDRVPYVIITAAKGAANFEKAEDPIY
VLENNIPIDCKWYLSNQLSKPLTRIFEPIIDNVEKSLLQGDHTRKIFIPTPTAKKGSLMM
FAHKKATCMGCKASINENEGNLCKYCLPKEVQIYLEKLAVLKEAELRYAHLWSEAQRIHG
TLLTDIMCTGDGCACQFYRRKKVQNDIRLAQEQVDKFGR
NT seq 3000 nt   +upstreamnt  +downstreamnt
ggagctgtgccggtgattcgactgtatggtgttaatgaaacggggaattcagtggcggtg
tttattcatgggttcactccgtatggatattttgcacttccgaggggcttgagggccaaa
cttgggagtcagtttgggaagggtttacaggtgaatggtgggaatgggcagcagcctcag
gcttgtcttggagtgcagttcttgaaggataggcaatccatcatggggtatgatccgtcg
cacacaaagtttctgaaggtgtacctcggtatgccggggatgattcccaagctcaagtcc
atcatggaggaaggattggtgctgcctgggatcgtgagggtggatgccaatggtaattct
gtgggggtgaacgagtctatgatttttcagccttatgagtgcaatgtgccgtttgtgttg
aggtatatgattgacagagatattacgggagctagttggttgagtttgcccaagggaacg
tatcgtttgaggcagactgagaatgaaaagggaacacactgtcagatcgaagcagacatt
tgcttcaatgaaatcatccctcgtaagccggagggagagtggtcaaaggtggcaccactt
cgtattctctcgtttgatatcgagtgtcagggaaggaagggttatttccccgaggcagag
catgatccagtgattcagattgccaattgtcttagtgtctatggggacaaagctcctatt
gtccagaacatcttcacattgaagggttgtcttccgattgtaggagcacaggtcatctcc
agtgaaacggagcaggaaatgctgcttaagtggcgtacgttcttgcacgcttcagatgcc
gatatctttactgggtataacgttcagaacttcgacattccatacttgttggatcgtgca
gaggcactctggaagaagaacgatcctaaactgagaatctttactcagtggggacgtgtc
aagaatacccaaactaaaaagcgacaacaaatgtttcagtcttcagcgtacgggcgtagg
gagaataccgaaacaactattgagggacgcgtaatctttgatatgcttccgtacatgcag
agaaaccacaagttgagctcttactctctcaactctgtctgtgccgagtacctctcgcag
cagaaggaggacgtgcaccactccatcatttcggatttgcaaaacggaactgatgctgat
aggcacaggcttgcggtgtactgccttaaagatgcattgttgccacaacgcttgatggac
aagttgagtgtcctcattaactacgtggagatggctagggtgacgggtgtgcctgtgtcc
ttcttgatctcgcgaggacaacaaatcaaagtattttcgatgattctacgtaaatgcagg
gacgtcaacctcgttgttccaactttgaggaagagtggagctggtgccgatgagggatat
gaaggtgcaacagtgctggatccaatcaaatcgtactacgaagtacctattgcaacgctt
gatttcgcatcgctttatccttccatcatgcaagcgtacaacttgtgctattctacgatg
gtgtctcaacacgaagcaagcaagattgatccatcaaagtacaagcgtagcgagaatggc
cacacatttgtccattccaacgtgaagaagggaattctacctatcattctcgaggaactg
ctctctgcgcgtaagagggcaaagaaagatatgaagaatgcccccaatgactttgagaag
tcagtgcagaacggtcgtcagcttgcgttgaaggtatcggctaactctgtgtacggtttc
actggagctggtgtcggacagcttccttgcgtgccgattgcgtcttctgttactgcgtat
ggtcgtttcttgttggagaaaaccaaagcttatgtggaggagcattacacggtggctcac
ggatacaaacataatgcaaaggtcgtctacggagatactgactccgtcatggttaagttc
ggcacagctactgttgctgaaacgttccctttggcaattgaagcggcagaaaagtgctct
gctatctttcctgatcctattcttttggagtttgagaaggtatactacccttacttgctc
atgaacaagaagagatacgctggcttgatgtggacacaggttgagaagtacgattacatg
gacaccaaaggtcttgaaacagtccgtcgtgataactgtgctttggtacgagaggttatt
cagacatcactcaacaaaattattatcgaaaggaacgtccctggtgcaatcgactacgtc
aagtcccagattgccgacttgttgcaaaacaagatggacatctctcgtctggtgattacc
aagagtcttggtggtaaagcggaggattataaagtgaagcaggctcacgttgaacttgca
gctcgtatgaggaagcgtgatgccgggtcagctccacagatgggcgatagggttccatac
gttattatcacagcagcgaagggtgctgcaaactttgaaaaggcagaggatccaatctac
gtgctagagaacaacattcccattgattgcaagtggtacctttcaaatcaactgtcgaag
ccgttgactaggatctttgagcccatcattgataacgttgagaagtcattgttgcaagga
gaccacactaggaagatcttcattcctaccccaactgcaaagaagggctcgttaatgatg
tttgctcacaagaaggcgacgtgtatgggatgtaaagcgagtattaatgagaacgagggt
aacttgtgcaagtactgtctaccaaaggaggttcagatttacttggagaagttggcagtg
ttgaaggaggcagaacttcggtatgcccatctctggtctgaggctcaacgaatccacggc
acccttctcactgacatcatgtgcacgggtgacggatgtgcttgccaattctatcgcagg
aagaaggttcagaatgatattcgcctcgcacaggagcaagtcgacaagtttggaaggtaa

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