KEGG   Thalassiosira pseudonana: THAPSDRAFT_354
Entry
THAPSDRAFT_354    CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps03015  mRNA surveillance pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_354
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_354
   03015 mRNA surveillance pathway
    THAPSDRAFT_354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_354
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_354
   03009 Ribosome biogenesis [BR:tps03009]
    THAPSDRAFT_354
   03012 Translation factors [BR:tps03012]
    THAPSDRAFT_354
Enzymes [BR:tps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     THAPSDRAFT_354
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     THAPSDRAFT_354
   mRNA cycle factors
    Stress granule specific factors
     THAPSDRAFT_354
Spliceosome [BR:tps03041]
 Complex C
  Other components
   EJC/TREX
    THAPSDRAFT_354
Ribosome biogenesis [BR:tps03009]
 Eukaryotic type
  90S particles
   Helicases
    THAPSDRAFT_354
Translation factors [BR:tps03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    THAPSDRAFT_354
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SPP1_GP23-1 AAA_30 AAA_22 AAA_19 CMS1 Utp25_C DUF2314
Other DBs
NCBI-GeneID: 7445384
NCBI-ProteinID: XP_002288555
JGI: 354
UniProt: B8BW92
LinkDB
Position
3:2053380..2054627
AA seq 369 aa
MNLKPTLLRGIYAYGFEKPSAIQQRAIRPIVCGRDVIAQSQSGTGKTAVFSISSLQLLDE
RSNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQGVQVLSG
TPGRVYDLIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLVSATLP
VEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTLTVTQAVI
FCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLWGRGID
VQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGVAINFVRTEDVRTLRDIEQFYSTQIDE
MPLNVSDLM
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgaacctcaaacccaccctcctccgcggcatatacgcctacggcttcgaaaagccctcg
gcgattcaacaacgtgccattcggcccatcgtatgtggacgggatgtgattgctcaaagt
caatccggtacgggaaagacggcggtgttttccatctcgtcgttgcaattgttggatgag
aggtcgaacgatccgcaggtgttgattttgagtcccacacgtgaattggccgagcagact
cagcgggtggtttcttctttgggggactttatgaatgtcaagtgccatgcgtgtataggg
ggaaagtcgttgggggaggataggaaggtgttgcagcagggagtgcaggttctttcgggt
actccggggagggtgtatgatctgatcaagaggggggatttgactactagggctttgaag
gcgttcattattgatgaggcggacgagatgttgaataaggggtttaaggagcagatctat
gacatctatagatatcttcctccacagacgcaggtggtcctcgtcagtgctaccctacca
gtagaagtattggagatgacgaggaagtttatgaacgaccctattcgtatcttggtgaag
agggatgagctcacgttggaaggtatcaagcaattctttgtctcggtggaaaaagaagaa
tggaagttcgacaccttgtgcgatttgtacgatactcttactgttacacaagcagtcatc
ttctgcaacacgaaacaaaaggtggattggttggcaacaaagatgagggaatcaaacttt
acggtagcagccatgcatggtgacatgacgcaagatgaacgtgacaaagtgatggaagac
tttcggtcggggtctagtcgagtgctcatcgcgactgatttgtgggggagaggtattgac
gtacagcaagtgagtctcgtgatttgttacgatttgccgacgaatcgtgaactatacatt
catcgcattggaaggagtggaaggtttggaaggaagggtgttgctatcaactttgtaagg
acggaggatgtaaggacgttgagggatattgagcagttttacagtactcagattgacgag
atgccgttgaatgttagtgatttgatgtga

DBGET integrated database retrieval system