Thalassiosira pseudonana: THAPSDRAFT_36420
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Entry
THAPSDRAFT_36420 CDS
T01078
Name
(RefSeq) DNA topoisomerase
KO
K03164
DNA topoisomerase II [EC:
5.6.2.2
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_36420
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_36420
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
THAPSDRAFT_36420
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Topoisomerases
THAPSDRAFT_36420
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromosome condensation proteins
Other regulators of chromosome condensation
THAPSDRAFT_36420
Centrosome formation proteins
Centriole proteins
THAPSDRAFT_36420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
TOPRIM_C
DNA_gyraseB
HATPase_c
Toprim
HATPase_c_3
Motif
Other DBs
NCBI-GeneID:
7446871
NCBI-ProteinID:
XP_002292682
JGI:
36420
UniProt:
B8C9L4
LinkDB
All DBs
Position
10:685591..689527
Genome browser
AA seq
1230 aa
AA seq
DB search
MDIDSSFEIGENYNPNQSSQNETTNKPTAAKKATKKSSKTIEETYQKKTQLEHILLRPDT
YIGSTEPLTQPMFVLNAETNRIAQRDVTYTPGLYKIFDEIVVNAADNKQRDPNMDRMEVT
VDAESGTISVLNNGKGIPVVMHKEHNCYVPTLIFGHLLTGSNFDDDEKKTTGGRNGYGAK
LANIFSTEFIVECVDSNEGMKFKQVFRNNMHVKEDPKVKKCTAAELKKGDYTKITFKPDL
NRFNMTSLDTDTVGLLSKRAYDIAGSMANKEGKKLSVYLNGKKLPVKDFKSYLALFDGIT
PPAAYEKVGDRWEVGISVSDGSFQQISFVNAIATTKGGGHVNYIADQVAKSLQASVKKKN
KGGTEIKPNQIKNHLSVFVNCLVENPTFDSQTKENLTTRPSAFGKEGQLSDKFMKQVEKC
GVVDAIMSYAKFKQNQALKRKGGTKKTKLTGITKLDDANNAGTAKSKDCTLIITEGDSAK
SLAVSGLSVVGRDFYGVFPLKGKPLNVRDATHSQIMKNEEIMNLVEIMGLKFGTTYTEEN
IKSLRYGHLMIMADQDHDGSHIKGLIINFIHHFWPSLLDIPDFLMQFITPIVKCTKGKKS
HTFFTLPEYEEWKEGTGNDAKGWTIKYYKGLGTSTSSEAKEYFSNLDIHEILDNDAITSG
AGLIDMAFSKSKVEERKKWLNRVEKDTFLNYSAAQRNGVNYSEFINRELVLFSQYDNVRS
IPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYIGEHSAYHHGDMSLNGTIIGMAQS
YCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFHPDDDALLNYLNDDGL
SIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPELMHPHFAG
YTGEITAESGSREGSYIVEGKIERTGDTTLLITELPIGKWTQDYKGFLEGLMIGTDKSPS
EISDFKENHTDTTVSFTVTASKDAIDKFEKEKGGLVGKFKLSTTISTKNMTLFDTNGKIH
KYKASVDILRTFFHHRLEYYVKRKDMLLEKMRRELKVYDNKARFVEEVCKGDLVVSNRKR
AELLADLQLRGYDLYPREVKKSETEEEDDTSVEEDASDAELAKGYEYLLGMKIWSLTFER
AEELRRQKAEKADEVEKLEGTSPEAIWMTDLEAIEEALDERDVELNAELKREVQAQSKNK
VRVAKIATAAAKKAKKSTKKKDEVRVVFVT
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggacattgacagttccttcgaaatcggggagaactacaatccaaatcaatcttcccaa
aatgaaacaaccaacaagccaaccgctgccaagaaggctaccaaaaagtcctccaaaacc
atcgaagagacttatcaaaagaagacccagctagagcacatcctccttcgtcccgacacc
tacattggctctacagagccactcacccagccaatgttcgtcctcaacgccgagaccaac
cgcatcgctcaacgtgatgtcacctacaccccaggcttgtacaaaatctttgacgaaatc
gtagtcaatgccgcggacaacaaacagcgtgatcccaatatggaccgtatggaggttacc
gtcgatgccgagagtggtactatttcagtgttgaacaatggaaaggggattcccgtggtg
atgcacaaggagcacaactgctacgtgcccactttgatctttggacatctcttgactgga
tccaactttgacgatgatgagaagaagactactggtggacgaaatggatacggcgccaag
cttgccaacatctttagtaccgagttcatcgtcgagtgtgtggactccaatgagggaatg
aagttcaagcaagtgtttaggaacaacatgcatgtgaaggaggatcccaaggtgaagaag
tgcacggctgcagagttaaagaagggggattataccaagattaccttcaagcctgatttg
aacaggttcaacatgacgagtttggatacagatacggtaggattgttgtccaagcgtgcg
tacgatattgctggatctatggccaacaaggaggggaagaagttgagtgtgtatttgaat
ggaaagaagcttcccgtgaaggacttcaagtcgtacctcgcactctttgatggaatcact
cctcctgctgcgtatgaaaaggttggtgatcgatgggaggttggaatctctgtttcagat
gggagctttcagcagatttcatttgtgaatgcgattgctaccaccaagggaggaggacac
gtgaactacattgccgaccaggtagccaagagtctacaggcgtcggtcaagaagaagaac
aaaggaggtaccgagatcaagcccaaccagatcaagaaccatctctccgtttttgtcaac
tgtctcgtggagaatccgacctttgactctcagactaaggagaatctcaccactcgtcca
tcggcctttgggaaggagggtcagctttctgacaaattcatgaagcaggtggagaagtgt
ggagtggttgatgccatcatgtcttatgccaagttcaagcaaaatcaggctttgaagcgt
aagggtggtaccaagaagacgaagttgactggaattaccaagttggacgatgccaacaac
gccggaactgctaagtctaaggactgtactttaatcatcaccgagggagactctgccaag
tctctggccgtatctgggctgtctgtcgtcggtcgtgatttctacggtgtgttccctctc
aagggtaagccattgaatgtacgtgatgctacccattctcagattatgaagaatgaagag
attatgaacttggtggagatcatgggtctcaagttcgggactacatacacggaggagaac
atcaagtcgttgcgttacggccacttgatgattatggctgatcaagatcacgatggtagt
cacatcaagggtctgatcatcaactttatccatcacttttggccatcgctgttggacatt
cctgactttttgatgcagttcatcacacctatcgtcaagtgtaccaagggaaagaagtca
cacacgttctttactcttcctgagtatgaggagtggaaggagggtactggcaatgatgcc
aaaggttggacgatcaagtactataagggtctcggtaccagtacaagcagtgaagccaag
gagtacttctccaacctcgacattcacgagattctggataacgatgccatcacgtccgga
gccgggctaattgacatggcattctccaagtccaaggtggaggagaggaagaagtggttg
aaccgcgttgagaaggatacgttcttaaactatagtgctgctcagaggaacggagtcaat
tactctgagttcatcaacagagagctcgttctcttctctcagtacgacaatgtgcgttct
attcctcacatcatggatggattcaaaccttcccagcgcaaggtgctctacgcctgcttc
aagaagaaactcaaggccgagatcaaggtggctcaactcgctggatacattggagagcac
tctgcttaccatcacggtgacatgtctctcaacggaaccatcatcggcatggctcaatcg
tactgtggctccaacaacttgaacctcctctacccttctggtcagtttggtactcgtcgt
atgggtggaaaggatcacgcctctgctcgttatatcttcacgaggctcgagaagattgca
cgtgctatcttccatcctgatgatgatgcacttctaaactacctcaacgatgacggtctt
tccattgagcctgagtactatatgcccgtcattcccatggtgttggtgaatggatctgat
ggtattggaacgggttggtcgtccaccatccagaatcacgaccctcgtgaggtgattgcc
aacatcaagaagatgatcaacggagaggagcctgagttgatgcatcctcattttgctggc
tatacaggagagatcactgccgagtctggatctcgcgagggaagctacattgtggaaggc
aagatcgaacgcactggcgacaccactcttctcatcaccgagttgcccatcggcaagtgg
actcaggactacaaggggttcttggaagggctcatgattggcaccgacaagagtcctagc
gagatctctgactttaaagagaaccacaccgataccaccgtctccttcactgtgactgca
tcgaaggatgccatcgacaagtttgagaaagagaagggaggccttgttggaaagttcaaa
ctctccaccaccatctctacaaagaacatgactctcttcgataccaacggaaagatccac
aagtacaaggcctccgttgacattcttcgtaccttcttccatcatcgtcttgagtactac
gtcaagcgtaaggacatgcttcttgagaagatgcgtcgtgagctcaaggtatatgacaac
aaagctcgttttgtagaggaggtgtgcaagggagaccttgtcgttagcaacaggaagcgt
gctgagctccttgccgacttgcagttgaggggatacgatctttaccctcgtgaggtgaag
aagtctgagacggaggaggaggacgatacttctgttgaggaggatgcttctgatgctgag
ttggccaagggctacgaatacttgcttggaatgaagatttggagtcttacattcgagcgt
gccgaggagcttcgtaggcaaaaggcagagaaggctgatgaggtggagaagcttgagggc
acgtctcccgaagccatttggatgactgacttggaggctattgaggaggcacttgatgag
agagacgtggagttgaatgccgagttgaagagagaggttcaggctcagtctaagaacaag
gttcgtgttgcaaagatagctactgctgctgccaagaaggcgaagaagagtaccaagaag
aaggacgaggtaagggttgtctttgttacctga
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