KEGG   Thalassiosira pseudonana: THAPSDRAFT_37748
Entry
THAPSDRAFT_37748  CDS       T01078                                 
Name
(RefSeq) nuclear vcp-like-like protein
  KO
K14571  ribosome biogenesis ATPase
Organism
tps  Thalassiosira pseudonana
Pathway
tps03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    THAPSDRAFT_37748
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tps03009]
    THAPSDRAFT_37748
Ribosome biogenesis [BR:tps03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    THAPSDRAFT_37748
SSDB
Motif
Pfam: AAA AAA_lid_3 RuvB_N AAA_5 AAA_16 AAA_14 AAA_2 AAA_22 AAA_33 RNA_helicase ABC_tran TIP49 AAA_28 Rad17 NPHP3_N Mg_chelatase nSTAND3 AAA_17 NACHT AAA_18 TsaE IstB_IS21 Parvo_NS1 ATPase_2 Viral_helicase1 AAA_3 NB-ARC AAA_7 nSTAND_NTPase5 Sigma54_activat AAA_24 Vps4_C ATPase Cytidylate_kin DUF815 Sigma54_activ_2 AAA_25
Other DBs
NCBI-GeneID: 7451886
NCBI-ProteinID: XP_002294217
JGI: 37748
UniProt: B8CDA1
LinkDB
Position
15:complement(<355284..>357313)
AA seq 605 aa
NLGGVSSLLTTIRELIEYPLSHPELFLHLGVEPPRGVLLRGPPGCGKTHLAKAIAGELNV
SYFQVSAPELVGGVSGESELRVRTLFESAARYAPAIIFIDEIDAIAPKRGEGSGGGGGGK
SMEKRIVAQLLTSMDSIHPNNTRNQSAVIVLGATNRPDAMDPALRRAGRFDREIVLGAPD
EKAREGILRVMTASMRVAGTLDYKVLAKKTPGFVGADVRSLTKEAAVLAINRIFRTDLLS
ESKKKTATDGEGESMEVDNEKAEAEPPKDDGNSNDIRTITPLTDTQLQPLYITMDDFLTA
IPHVQPSSKREGFATVPDVSWNDIGALSDIREELTLSVLEPIAHPEKFEALGLPLPAGVL
LYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESERSVRVVFERARSSSPCIIF
FDELDSLCPKRGSDGGGGGGVSERVVNQLLTEMDGLDSRRSVFVIAATNRPELIDPAMLR
PGRLDKLLYVPLPSPTDRLSILRALSTKIKLAPDVDLHAIANDPHSNGFSGADCAALLRE
AGLAVLRDGVLNRTKDKDGNEVVDKKTEIKLLQITAYHFRYAFDHVLPSVSKKDQARYDR
LRERM
NT seq 1815 nt   +upstreamnt  +downstreamnt
aatctaggcggtgtttcctccctactcactactattcgtgaacttattgaatacccacta
tcgcatccggagctctttcttcatctgggagtagaaccacccagaggggtgttactacga
ggacccccaggttgtggaaagactcatctggccaaggccatcgccggagaattaaacgtt
tcgtactttcaagtgtctgctccagagttagtgggtggagtgagtggcgagagtgaatta
cgagttcggacgttgtttgagagtgcagcacgttatgcacctgccattatattcattgat
gagattgatgctattgctccgaaacgaggtgagggatcgggaggtggtggaggggggaag
agtatggagaagcgtatagtggctcaattgttgactagtatggatagtatccatccaaac
aatacaaggaatcaatcagctgtcattgtactgggtgcgactaatcgtccggacgccatg
gatccagcattgagaagggcaggacgcttcgaccgtgagattgttctaggagcacctgat
gaaaaggcacgtgaggggatattgcgtgtaatgacggcgagtatgagagtggcgggtacg
ttggattataaagtgttggcgaagaagactccgggattcgtgggtgcggatgtgaggagt
ttgacgaaggaggcggcggtgttggcgattaacagaatatttaggacggatttgttgagt
gagagtaagaagaaaacggccacagatggcgagggtgaatctatggaagttgacaatgaa
aaggccgaggcagaacctccgaaggacgatggcaactcaaacgacattcgtaccattact
ccactcaccgacactcagcttcagccgctgtacatcacaatggacgactttctcaccgca
attccacacgtccaaccctcttccaaacgagagggatttgcaactgtaccagacgtgtcg
tggaatgacattggagccttgtctgatatacgagaggagttgacattgagtgtcttggag
ccgattgctcatccggagaagtttgaggctttggggctacctttgccggctggtgttttg
ctatacgggcctcctgggtgtggaaagactctactcgccaaggctattgccaatgaatcg
ggagccaacttcatctcagtgaaaggaccagagctactcgacaaatatgttggagaaagt
gaaagatcagttcgtgttgtctttgaacgagctcgtagcagcagtccttgcatcatcttc
tttgatgagctggattcactgtgtcctaagcgaggaagtgacggaggaggtggaggtggt
gtgagcgaacgtgtggtgaatcagttgttgactgagatggatggactggatagcagaagg
agtgtatttgtaattgcagcgacgaatcgtccagagttgattgatcctgcaatgctgaga
cctggtcggctggataagcttctctatgttccattgccatctccaacagatagattgtct
attcttcgtgctctcagtaccaagatcaaacttgcaccagacgtggatcttcatgctatt
gccaatgatcctcactctaacggatttagtggtgccgattgtgctgccttattgcgtgag
gcaggacttgcagttcttcgggatggagtgttgaaccgaaccaaagacaaggatggcaat
gaggtggtggataagaagacggagatcaaactattacaaatcacagcttaccatttcaga
tatgcatttgatcacgtgctgccttctgtatccaagaaagatcaggctcgttatgacaga
ttgagagaaaggatg

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