Thalassiosira pseudonana: THAPSDRAFT_37748
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Entry
THAPSDRAFT_37748 CDS
T01078
Name
(RefSeq) nuclear vcp-like-like protein
KO
K14571
ribosome biogenesis ATPase
Organism
tps
Thalassiosira pseudonana
Pathway
tps03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
THAPSDRAFT_37748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_37748
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
THAPSDRAFT_37748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_16
AAA_14
AAA_2
AAA_22
AAA_33
RNA_helicase
ABC_tran
TIP49
AAA_28
Rad17
NPHP3_N
Mg_chelatase
nSTAND3
AAA_17
NACHT
AAA_18
TsaE
IstB_IS21
Parvo_NS1
ATPase_2
Viral_helicase1
AAA_3
NB-ARC
AAA_7
nSTAND_NTPase5
Sigma54_activat
AAA_24
Vps4_C
ATPase
Cytidylate_kin
DUF815
Sigma54_activ_2
AAA_25
Motif
Other DBs
NCBI-GeneID:
7451886
NCBI-ProteinID:
XP_002294217
JGI:
37748
UniProt:
B8CDA1
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All DBs
Position
15:complement(<355284..>357313)
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AA seq
605 aa
AA seq
DB search
NLGGVSSLLTTIRELIEYPLSHPELFLHLGVEPPRGVLLRGPPGCGKTHLAKAIAGELNV
SYFQVSAPELVGGVSGESELRVRTLFESAARYAPAIIFIDEIDAIAPKRGEGSGGGGGGK
SMEKRIVAQLLTSMDSIHPNNTRNQSAVIVLGATNRPDAMDPALRRAGRFDREIVLGAPD
EKAREGILRVMTASMRVAGTLDYKVLAKKTPGFVGADVRSLTKEAAVLAINRIFRTDLLS
ESKKKTATDGEGESMEVDNEKAEAEPPKDDGNSNDIRTITPLTDTQLQPLYITMDDFLTA
IPHVQPSSKREGFATVPDVSWNDIGALSDIREELTLSVLEPIAHPEKFEALGLPLPAGVL
LYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESERSVRVVFERARSSSPCIIF
FDELDSLCPKRGSDGGGGGGVSERVVNQLLTEMDGLDSRRSVFVIAATNRPELIDPAMLR
PGRLDKLLYVPLPSPTDRLSILRALSTKIKLAPDVDLHAIANDPHSNGFSGADCAALLRE
AGLAVLRDGVLNRTKDKDGNEVVDKKTEIKLLQITAYHFRYAFDHVLPSVSKKDQARYDR
LRERM
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
aatctaggcggtgtttcctccctactcactactattcgtgaacttattgaatacccacta
tcgcatccggagctctttcttcatctgggagtagaaccacccagaggggtgttactacga
ggacccccaggttgtggaaagactcatctggccaaggccatcgccggagaattaaacgtt
tcgtactttcaagtgtctgctccagagttagtgggtggagtgagtggcgagagtgaatta
cgagttcggacgttgtttgagagtgcagcacgttatgcacctgccattatattcattgat
gagattgatgctattgctccgaaacgaggtgagggatcgggaggtggtggaggggggaag
agtatggagaagcgtatagtggctcaattgttgactagtatggatagtatccatccaaac
aatacaaggaatcaatcagctgtcattgtactgggtgcgactaatcgtccggacgccatg
gatccagcattgagaagggcaggacgcttcgaccgtgagattgttctaggagcacctgat
gaaaaggcacgtgaggggatattgcgtgtaatgacggcgagtatgagagtggcgggtacg
ttggattataaagtgttggcgaagaagactccgggattcgtgggtgcggatgtgaggagt
ttgacgaaggaggcggcggtgttggcgattaacagaatatttaggacggatttgttgagt
gagagtaagaagaaaacggccacagatggcgagggtgaatctatggaagttgacaatgaa
aaggccgaggcagaacctccgaaggacgatggcaactcaaacgacattcgtaccattact
ccactcaccgacactcagcttcagccgctgtacatcacaatggacgactttctcaccgca
attccacacgtccaaccctcttccaaacgagagggatttgcaactgtaccagacgtgtcg
tggaatgacattggagccttgtctgatatacgagaggagttgacattgagtgtcttggag
ccgattgctcatccggagaagtttgaggctttggggctacctttgccggctggtgttttg
ctatacgggcctcctgggtgtggaaagactctactcgccaaggctattgccaatgaatcg
ggagccaacttcatctcagtgaaaggaccagagctactcgacaaatatgttggagaaagt
gaaagatcagttcgtgttgtctttgaacgagctcgtagcagcagtccttgcatcatcttc
tttgatgagctggattcactgtgtcctaagcgaggaagtgacggaggaggtggaggtggt
gtgagcgaacgtgtggtgaatcagttgttgactgagatggatggactggatagcagaagg
agtgtatttgtaattgcagcgacgaatcgtccagagttgattgatcctgcaatgctgaga
cctggtcggctggataagcttctctatgttccattgccatctccaacagatagattgtct
attcttcgtgctctcagtaccaagatcaaacttgcaccagacgtggatcttcatgctatt
gccaatgatcctcactctaacggatttagtggtgccgattgtgctgccttattgcgtgag
gcaggacttgcagttcttcgggatggagtgttgaaccgaaccaaagacaaggatggcaat
gaggtggtggataagaagacggagatcaaactattacaaatcacagcttaccatttcaga
tatgcatttgatcacgtgctgccttctgtatccaagaaagatcaggctcgttatgacaga
ttgagagaaaggatg
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