Thalassiosira pseudonana: THAPSDRAFT_38230
Help
Entry
THAPSDRAFT_38230 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10357
myosin V
Organism
tps
Thalassiosira pseudonana
Pathway
tps04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
THAPSDRAFT_38230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_38230
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_38230
03029 Mitochondrial biogenesis [BR:
tps03029
]
THAPSDRAFT_38230
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tps04812
]
THAPSDRAFT_38230
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
THAPSDRAFT_38230
mRNA cycle factors
P-body specific factors
THAPSDRAFT_38230
Membrane trafficking [BR:
tps04131
]
Others
Actin-binding proteins
Myosins
THAPSDRAFT_38230
Mitochondrial biogenesis [BR:
tps03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
THAPSDRAFT_38230
Cytoskeleton proteins [BR:
tps04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
THAPSDRAFT_38230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
IQ
AAA_16
TsaE
AAA_22
Sigma54_activat
AAA_lid_6
AAA_10
ABC_tran
AAA_19
Motif
Other DBs
NCBI-GeneID:
7449929
NCBI-ProteinID:
XP_002297047
JGI:
38230
UniProt:
B8LDB2
LinkDB
All DBs
Position
19
Genome browser
AA seq
889 aa
AA seq
DB search
DDLITLTHLHEPAVVHCLQKRYESDQIYTSTGPILIALNPFKSCNSLYSDTVMRQYWRRG
ESEMLLPPHVYALADATYPSCSSLGCDQSILVSGESGAGKTVTTKFIMQYLATLNSNSNV
NIEQQVLQSNPILESFGNARTVRNDNSSRFGKFIEIRFNATGTLVSASIETYLLEKVRLI
SQSEGERNYHVFYEMLTGMSDEDLNRFILSDYTAEDFKMTSCSGTYDRRDGVQDTETYEE
LRDALEMMGFTPEQQNDVFSIAAVALHLSNLSINPIKGGEECEIDLENPHLEPVLQLLGV
TRENLNQAICYFKIEARGQSYTRAVQKDKAEKGLEALIKATYSAMFDYIVKSINASITVK
KSVNSLSGSVGRGTTDSGRAVIGVLDIFGFESFKTNSFEQLCINYCNEALQQQFDLFVLK
NEQEEYEREGIMWSFISFPENQDVLDLIWKKGCGILNILDDQCRAPGTTDKTFANDLYQK
LTGKPRFEANFRQVGARQFGVFHYAGLVEYDTDGFVEKNKDELPREAADLLLSSSSSFVK
ELASIISSAASPEPTKSARNVAGAKKSVTVGGHFSKQLQELRAKIDLTSPHYVRCLKPNG
LLVPDHFDPLMIVEQLRCAGVVEAVRVSRVGYPQRYSHSQFVSRYRTLGAEEMKKAARSS
RKTKPADDSVDLLAIGIQVGKTKVFLRRRAFDILEKLRKDCMSTAATTIQSVGRGYIEYR
SYQEISVATLQLQCWCRIILARQRVEAARECINSQRIQSAYRRFAARRVFLSVLTVAQWC
QSVHRGALGRARYNELNRIRKAIVIESYWRSLPHMRRFQRMKASAVAVQCAVRCRRSRLL
LKELIMNAKSLQNVAQERDQLRIMMEAMKLEVERAKATAKSEAEEAAKI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
gatgatttaatcacattgactcatttgcatgagcctgcagtggtgcactgtttgcaaaag
agatacgagagtgatcaaatctatacgtcgacgggtcctatattaattgcactgaatcca
ttcaagagttgcaatagtttgtattcggatacggtgatgagacagtattggagaaggggg
gagagtgagatgcttcttccaccgcatgtctatgcacttgccgacgcgacgtatccaagc
tgttcttcgttgggatgtgatcaatcaatcctagtcagcggggaatccggagctggaaag
acagtgacaaccaaattcatcatgcaatatctagccacgttgaacagcaacagcaatgtc
aacattgaacaacaagtgttgcaatccaaccccatcttagaatcatttggcaatgcgcga
acagtacgaaacgacaatagttcacggtttgggaagttcatagagattcgattcaacgct
acaggcacgttggtgagtgcctccattgaaacgtatttgttggaaaaggtacggttaata
tctcaatcggagggagaacggaactatcacgtcttttatgagatgctaacgggcatgagt
gacgaggatttgaatcggttcattctgtcagactacactgccgaggactttaaaatgacg
agttgttcggggacatacgatcgtcgtgatggagtgcaagatacggaaacgtacgaggag
ctgagggatgctcttgagatgatgggctttacacccgagcaacagaatgatgtcttttca
atagctgcagtagcgttgcacttgtccaacttgtccatcaaccctatcaagggcggggag
gaatgtgagattgatttggagaatcctcatttagagccagtgttacagcttcttggtgta
acgagggagaatctcaaccaagcaatatgctatttcaagatagaggcgcgtggtcagtct
tatacacgtgctgtacagaaggataaggccgaaaaggggttggaagcattgatcaaagca
acctacagtgccatgtttgactatattgtcaaatcaatcaacgcatcaatcacagtgaag
aagtcagtcaactcactgtctggatcggttggacggggtacaacagattcgggacgtgcc
gttattggagtgcttgatatctttggatttgagtcattcaagacgaactcctttgagcag
ctctgcatcaactactgcaatgaagcactgcaacaacaattcgatctctttgtattaaag
aacgagcaggaggaatatgagagggaagggatcatgtggtcgttcatttcattccctgag
aatcaagatgtgctcgatctcatttggaaaaagggatgtggaatactcaatattttggac
gatcagtgccgggctcctggaacgactgacaagacctttgccaacgacctatatcaaaag
ctgaccggaaaaccccgatttgaagccaactttcgtcaagtgggagcaaggcagtttggt
gtgtttcattatgctggtttggtggagtatgataccgacggatttgtggaaaagaataag
gatgaactacctcgtgaagcagcggacctcttgctgtcttcgtcaagtagctttgtgaaa
gaacttgcatcgatcattagttcggcggcatcaccagagccaacaaaatcagcacgcaat
gtagcgggtgcaaagaagagtgtcactgtaggaggccatttcagcaaacagcttcaggag
cttcgcgcaaagattgatttgacatctccgcattacgtccgttgtcttaagccaaatggg
ttgcttgttccagatcactttgatccactaatgattgtcgagcaactgcggtgtgctggt
gttgtcgaggccgtccgtgtgagccgtgttggatatcctcaacggtacagtcattctcag
tttgtgtcacgatatagaactttgggagcggaagagatgaaaaaggcggcaaggtcgtct
aggaagacaaagccagcggacgactcagttgatctattagcgattggcatccaagtgggc
aagaccaaggtcttcttgcgtcgacgagcttttgatattctggagaaattgcgaaaggac
tgcatgtctaccgctgccacaacaatccagtccgttggtcgtggatacatcgagtatcgt
tcataccaggagattagcgtggctacacttcagttgcagtgctggtgcagaatcatcctt
gctcgtcaaagagttgaagccgcacgagaatgcatcaattcacaaagaatccaaagtgct
tatcgacgcttcgcagctcgtcgtgtctttctcagtgtattgacagtagctcaatggtgt
cagagtgtgcatcggggggcactcggtcgtgctcgatacaatgaattgaaccgcattcgc
aaagccatcgtcattgagagttattggagaagccttcctcacatgagacggtttcaacga
atgaaagcttcagcagtggctgtccaatgtgcagttcggtgccgcagatcgcgtctactc
ttaaaagagttgataatgaatgcaaagagtctgcagaacgttgcccaagaacgtgaccag
cttcgcatcatgatggaggcaatgaagttagaagttgagcgagccaaagctacagcaaag
agtgaagcagaggaggcagccaagatc
DBGET
integrated database retrieval system
