Thalassiosira pseudonana: THAPSDRAFT_38578
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Entry
THAPSDRAFT_38578 CDS
T01078
Symbol
BIP2
Name
(RefSeq) luminal binding protein
KO
K09490
endoplasmic reticulum chaperone BiP [EC:
3.6.4.10
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03060
Protein export
tps04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
THAPSDRAFT_38578 (BIP2)
04141 Protein processing in endoplasmic reticulum
THAPSDRAFT_38578 (BIP2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
tps03110
]
THAPSDRAFT_38578 (BIP2)
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_38578 (BIP2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_38578 (BIP2)
Enzymes [BR:
tps01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.10 non-chaperonin molecular chaperone ATPase
THAPSDRAFT_38578 (BIP2)
Chaperones and folding catalysts [BR:
tps03110
]
Heat shock proteins
HSP70 / DNAK
THAPSDRAFT_38578 (BIP2)
Membrane trafficking [BR:
tps04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
THAPSDRAFT_38578 (BIP2)
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
THAPSDRAFT_38578 (BIP2)
Exosomal proteins of other body fluids (saliva and urine)
THAPSDRAFT_38578 (BIP2)
Exosomal proteins of colorectal cancer cells
THAPSDRAFT_38578 (BIP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
DUF3540
ParM_N
FGGY_C
Hydantoinase_A
NRho
Ydc2-catalyt
Motif
Other DBs
NCBI-GeneID:
7442819
NCBI-ProteinID:
XP_002295019
JGI:
38578
UniProt:
B8CFH3
LinkDB
All DBs
Position
22:complement(385698..387584)
Genome browser
AA seq
628 aa
AA seq
DB search
GTIIGIDLGTTYSCVAVWKAGTGVEIIPNDQGNRITPSYVAFSEEGRLVGDSAKNQATVN
PENTIFDVKRLIGRKFGDESVQMDRKLMPYKITNVDDRPYVTVQVSNGSSVEKFAPEEIS
AMVLSKLKADAERYLGKEITRAVVTVPAYFNDAQRHATRDAGVIAGLYVERIINEPTSAA
IAYGIQEAMGEEAEEQNVLVFDLGGGTFDVTLLTIDNGIFEVLSTNGDTHLGGSDFDQNV
MNYFISIIQKKDKKDITGNNRALQKLRKEVERVKRALSLQLTARLDIEDLIPGYDFSETL
TRAKFEELNDELFKKTLKPVARVMEDSGLSIDEVDQIILVGGSTRIPKVQQLIKDFFKGK
EPNKGINPDESVAVGAAIQGSILSGEGGDAVKDVMLLDVTPLSLGTESDGGLMTVLIKRG
TTIPTENSMEFHTMKDGQTQMTIDVFEGERSQTKHNHLLGLFQMTDLPPAPRGQIEVRIT
FKVDANGMLEVTAQNLATQSKKSITITAEDGRLSEEEMKAMVEEAAKYAEEDKKEAERIE
ARNRLESHLYRVSSTVKDNEERIDDKDDLKTLIDSLDEIMDWLESNQDASTAEFAEKYKE
IDSLSKPVLQSMYEAGGGDDNVGFDDEL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
ggaaccatcatcggcatcgacctcggcacgacctactcctgcgtcgccgtttggaaagcc
ggaactggcgtagaaatcatccctaatgatcaaggcaatcgcatcacgccatcttacgtc
gcgttctcggaagaggggcgattggtgggcgactcggccaagaatcaggccacggtgaac
ccagagaatacaatctttgatgtcaagaggttgattggacgaaagtttggagatgagagt
gtgcagatggataggaagctgatgccttataaaattaccaatgtggatgatcgtccgtat
gtgactgtccaagtgtctaatggcagcagcgttgagaagtttgctccagaggagatatct
gccatggtactgtccaagttgaaggcggatgcagagaggtatttggggaaggagataaca
agggcggtagtcactgttcctgcctatttcaacgatgctcaacgtcatgctacgagggat
gctggtgtgattgcggggttgtatgtggagaggattattaatgagccgacgagtgctgcg
attgcatatggtattcaggaggcaatgggggaggaggcggaagagcagaatgtattggta
tttgatttgggcggaggaactttcgatgtcacccttcttactattgacaatggtatcttt
gaggtgctgtctaccaatggagatacacatctggggggatctgactttgatcaaaacgtg
atgaactacttcatttccatcattcagaagaaggataagaaggatatcacggggaacaac
cgtgcattgcaaaagttgcgtaaggaagtggagcgagtgaagcgtgccttgtcgctacag
cttacggcacggttggatattgaggacttaatcccggggtatgacttttccgagacgttg
acaagagccaagtttgaagagctgaatgatgaattgttcaaaaaaacgctcaagccagtg
gcacgtgtcatggaggattcaggactgagtattgacgaggtagatcagatcatcttggtg
gggggatctactcgtattccaaaggttcagcagttaatcaaggactttttcaagggaaag
gagcctaacaagggcatcaatcccgatgagagtgtggctgttggagctgctattcaagga
agtattctcagtggtgagggtggtgatgctgtcaaggatgtcatgttgttggatgttacg
ccactcagtcttggtaccgagagtgatggaggattaatgaccgtgttgatcaagagaggc
acaacaatccctaccgagaattctatggagtttcatacaatgaaggatggacaaacacaa
atgacaattgatgtgtttgaaggagaacgctcgcagacaaagcacaatcatttgcttggt
ctattccaaatgacggatctacctccagctcctcgtggacaaatcgaagtacggattaca
ttcaaagtggatgccaatggaatgttggaagtgactgctcaaaaccttgccacccaaagc
aagaagagcatcacaatcactgccgaagatggacgactctctgaagaggaaatgaaggcc
atggttgaagaggcagcaaagtatgcggaagaagacaagaaggaagccgagaggattgaa
gcccgcaatcgtttggaatctcatctatatcgcgttagcagtactgtgaaggacaacgag
gaacgtattgatgacaaggacgacttaaagaccttgattgatagtttagatgagattatg
gactggttggaatccaaccaagatgcaagtactgccgagttcgccgagaagtacaaggag
attgattcattgtcaaaaccagtgcttcagagtatgtacgaggcgggtggcggagacgat
aatgtcggatttgatgacgagctgtaa
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