Thalassiosira pseudonana: THAPSDRAFT_39845
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Entry
THAPSDRAFT_39845 CDS
T01078
Symbol
DNA_TopoIV
Name
(RefSeq) DNA topoisomerase IV, ATP/GTP binding site
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_39845 (DNA_TopoIV)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_39845 (DNA_TopoIV)
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
THAPSDRAFT_39845 (DNA_TopoIV)
DNA replication proteins [BR:
tps03032
]
Prokaryotic type
DNA Topoisomerases
THAPSDRAFT_39845 (DNA_TopoIV)
DNA repair and recombination proteins [BR:
tps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THAPSDRAFT_39845 (DNA_TopoIV)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-GeneID:
7441701
NCBI-ProteinID:
XP_002288768
JGI:
39845
UniProt:
B8BXG7
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Position
3:complement(670026..672639)
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AA seq
820 aa
AA seq
DB search
MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG
DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM
DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG
RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS
GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR
DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA
FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSAQADA
VLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRFGTPR
KTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGTSNTISDD
NAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSDDVITSVL
PVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCTDNDDIL
VGSTRGQATRFKAADLRPTARTSRGVKSMTLKKGDTIADMNVLRKEDKFVLVVTTEGYGK
RVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLITSQGVIVRQKVSDI
SCQGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGDVTQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatgcgttatcaatcatattggggagagcacttcccgatgcaagggatggaatg
aaacccgtgcataggaggatattgtatgcgatgaatgggttgggattgagtcctagtggg
agttataggaagtgtgccagggttgttggtgaggtgttgggcaaataccatcctcatgga
gatactgccgtgtacgatgcgttggttcgtctagctcagccgttctctaccaacattcca
ctgattgatggacatggcaactttggaagtatcgataatgatcccgcggcagctatgcga
tatacggaatgtcgtttgactcgcatcgctgctgaaacattactggatgacatcctaatg
gacacagtggagtttctaccaaactttgacggaagcgagtacgaaccgagtgtacttccg
gcaaaggttcccattctactcttgaatggaggtgcggggattgcagtgggtatggcgaca
aatgtacctcctcataacttgggtgaattgatggatgcatgtgtggcattgacgaagggg
aggaacgagggcggggaggaggttacggatggaaagttgctgcagattattcctgccccc
gatttcccgaccggagcatgcatcattggaaagtctggatctcggagtttgtacacaacc
ggcaatggaggagtggtaatgcgtgcagtaatgcatttggaagaagtacccacctcgtct
ggaaagaagaaatcaacacgtaatgcaatcattgtcacagaattaccctaccaggtgaac
aaagccgctctgttagagcgtattgcaattcttgtcaacgaaaagaaactggaagggatt
gcagacttgcgtgatgagagtgatcgtgacggaattaggatggtgattgagttgaaacga
gatgcagttgctgcggtggtacagaacaacttgctgaaaaagacttcattgcagactacc
ttctcgggtaacttcttagccttatttggtggtggaaccaatccccagcggtttacgctg
cgtgaggctttggactgcttccttgactttcgcttccaaaccatacgcaacaagtgtgcc
ttccagttggataaggtggagaacagggctcacattgttgctggattattgattgctctt
gaatctaccgacgaggtcattgcaatcgtgagaaatgctccagatcaagcatcggcccgt
gcggctctcatgagtactgacaatcctaaacttggtctttccagtgcacaagcagatgcc
gttctcaaattgcagctcggtcagttgactcggttgaatggagacaaactcaatgatgag
aaaaagacattggatgaaagtcagacgaatcttagaaaccttctaaccaatgatgctgcc
gtgagggatacaatgttagaggagtttatggcgatgaagaagcgatttggtactcctcgt
aagacaaagattctccccgacgaagaagacaaggcagacatcgatttggtacagaatgaa
cgatctgtcattgttgttacgagaggtggatacatcaagcgaatgccgttgaagacgttt
gaaagccagaaccgtgggactcgtggaaagagaggtacttcgaacacgatttcggacgac
aacgcagtagcgcactgcttcacttgcaacgaccacgatactgtgttgatgacaactcaa
agcggagttgcgtatgggctccgtgcgtaccaggtaccagagggtggtagaaccgctcgt
ggtgctcctattccctcggtgttacctgtcaagtcggacgatgtcatcacatctgtacta
ccagtctcggagttcagtaagaatgagttcattgtactcgcaacagagtatggatggatc
aaaaagacacccctcgctgcttttgagaaactcactcagcgtgggctcatcattgcaaca
ttagctgacggggatcgtctcaactggtgtgagaagtgcaccgacaacgatgacatcctg
gtgggatctactcgaggtcaggctacacggttcaaagcagctgatttacgacctacggcc
agaactagccgcggcgtcaagtcaatgacactcaaaaagggagatactatcgctgatatg
aatgttttgaggaaagaagacaagttcgtgctcgttgtcacgacagagggttacggcaaa
cgagtgttgacggaagagttccgcactacagcacgcggtggatcgggcgtgatagcaatc
aaattcaaagctggtcgcgtggatgataggattagcacaatgcgggtggttaatgaggac
gatgagatccttcttattacatctcagggggttattgtacgacagaaggtgtcggatatt
tcatgtcaggggcgtgctgcaacgggagttctcgtgcaaaaggttgacgtgaggagtgga
gattcaatctcaactgttagcatcgtacccaaagaggacgcggatggagatgtaactcaa
tga
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