Thalassiosira pseudonana: THAPSDRAFT_40028
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Entry
THAPSDRAFT_40028 CDS
T01078
Name
(RefSeq) arginyl-trna synthetase
KO
K01887
arginyl-tRNA synthetase [EC:
6.1.1.19
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
THAPSDRAFT_40028
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
tps01007
]
THAPSDRAFT_40028
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_40028
03029 Mitochondrial biogenesis [BR:
tps03029
]
THAPSDRAFT_40028
Enzymes [BR:
tps01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.19 arginine---tRNA ligase
THAPSDRAFT_40028
Amino acid related enzymes [BR:
tps01007
]
Aminoacyl-tRNA synthetase
Class I (G)
THAPSDRAFT_40028
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
THAPSDRAFT_40028
Prokaryotic type
Other AARSs
THAPSDRAFT_40028
Mitochondrial biogenesis [BR:
tps03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
THAPSDRAFT_40028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1d
DALR_1
Arg_tRNA_synt_N
tRNA-synt_1
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
7449555
NCBI-ProteinID:
XP_002288496
JGI:
40028
UniProt:
B8BYR1
LinkDB
All DBs
Position
3:1769684..1771849
Genome browser
AA seq
602 aa
AA seq
DB search
MSDEERTTIIEAAASSAKPFTIGDSMVTPATKPEFGDYQCNAAMSLAKSAGLNPRECASK
IVDGLKAIEGFDTIMEEPEIAGPGFINLRFKDGYLAGAAGKMAMDAEDGGRLAIPVTKNK
QKIIVDFSSPNIAKEMHVGHLRSTIIGDTLSNLLTFSGHDVLRLNHVGDWGTQFGMLVEH
LRDEFPEALDKESSKNVDLGDLVMLYKAAKKRFDVDEEFKVRAREGVVKLQAGDEEALAA
WESLCAASRVEYQKIYDLLSIKGLNERGESFYNPYLVGVIEDLESQGLAVESEGATAVFL
DGYTNRDGSPLPMLVRKSDGGFNYATTDLAAIRHRVQLDPSDGGEKADRVLYVTDAGQSQ
HFEMVFAAAKKAGFIAEPISLEHVPFGLVQGEDGKKFATRSGDTVKLKDLLDEAVKIAGE
DMKSRMDNPDQELSEALNDVAKTVGIGAVKYADLSMNRESNYKFSYGRMLSLNGNTAPYM
LYAYARICGIVRKATGQSEDTKVEWPEASDIIISHDAEKQLVRNLVKLPDILSEVETDLY
PNRLCDYLFETSQKFNQFYENCSVNNAETPELKASRLSLCTVSAATIRLLMNLLGIQVVE
KL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgaagaacgtactacaatcatcgaagcggcagcatccagtgcgaaaccattc
acaatcggtgattccatggtaacgcccgccacaaaacccgagtttggagactatcaatgc
aatgctgccatgtcccttgccaaatcagctgggttgaacccacgagagtgtgcctcaaag
attgtcgatgggttgaaggcgattgagggttttgatactattatggaagaaccggagatc
gccggaccgggatttattaacctgaggtttaaggatgggtatttggctggtgctgcgggg
aagatggctatggatgctgaggacggtggacgattggctattcctgtgacaaaaaacaaa
caaaagatcattgtcgacttttcatcacctaacattgccaaagaaatgcacgtgggccat
ctccgctccacaatcatcggagatacactgtccaatctcctcaccttctccggccacgac
gtcttacgtctcaaccacgtgggtgactggggaacacaatttggtatgctcgtggagcat
ttgcgtgatgagtttcccgaggctttggataaagagagttcgaaaaatgtggatttgggc
gatttggtcatgttgtataaagcggcgaagaagaggtttgatgtagatgaggagtttaag
gttagggctagggagggagtggtgaagttgcaggcgggagatgaggaggctttggctgca
tgggagtcactttgtgctgcgagtcgagttgaataccaaaagatctacgatcttctcagt
atcaagggcctaaacgaacgtggtgaatccttttacaacccataccttgttggtgttatt
gaggacttggaaagtcaaggacttgcagtagaaagtgaaggtgctactgctgtgtttctt
gatgggtatacaaatcgcgacggctctccacttccaatgctagtaaggaagtctgacgga
ggattcaactatgcaaccacagatttggcagccattaggcatcgcgttcagttggatcca
tctgacggaggagagaaggcagaccgagtattgtacgtgacggatgctggccaatcacaa
catttcgagatggtgtttgctgctgctaagaaagctggtttcatcgcagagcccatttca
ttggaacacgtgccttttggtcttgtgcagggtgaagatggaaagaagtttgctactcga
tccggcgataccgtcaaactaaaggatttgttggacgaggcagtgaagattgctggtgag
gatatgaaatcacgaatggacaaccccgaccaagaattatcagaggcactcaacgacgtg
gccaagacggtaggaattggtgctgtcaagtacgcagacctctcaatgaatcgtgaatcc
aactacaaattcagctacgggagaatgctcagcctcaatggcaacacagctccttacatg
ctctatgcatatgcacgcatctgcggtattgttcgcaaagcgacgggacaatcggaggat
acaaaggttgagtggcctgaagcgagtgatatcatcatctcgcatgatgctgagaagcaa
ctcgttcgcaacctcgtgaagctacctgatatcttgagcgaggttgagacagatctttat
ccaaacagattgtgtgattacttattcgagaccagtcagaagttcaatcagttttacgag
aactgctcagtgaacaatgccgaaacgcctgaattgaaagcaagccgactgtctttgtgt
actgtatctgctgcaaccatccgtttgctgatgaatcttcttggcattcaagttgtagaa
aagctataa
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