Thalassiosira pseudonana: THAPSDRAFT_40335
Help
Entry
THAPSDRAFT_40335 CDS
T01078
Name
(RefSeq) topoisomerase
KO
K03167
DNA topoisomerase VI subunit B [EC:
5.6.2.2
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_40335
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
THAPSDRAFT_40335
DNA replication proteins [BR:
tps03032
]
Prokaryotic type
DNA Topoisomerases
THAPSDRAFT_40335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topo-VIb_trans
HATPase_c_3
HATPase_c
NFACT_N
Motif
Other DBs
NCBI-GeneID:
7447975
NCBI-ProteinID:
XP_002289341
JGI:
40335
UniProt:
B8BZH3
LinkDB
All DBs
Position
4:<1214094..1216482
Genome browser
AA seq
650 aa
AA seq
DB search
MPPKKSSSKKDEIQQSKSPAEFFAENQSIAGFDNPGKSLYTTLRELVENSLDACESVDVL
PDISVVIEEMTQDQFNEMRGVPTSGGPGKKKKGVDGSDDAAVGDAESGDKDNGKGVNEKG
AKKRRAGGDAYFLVTVRDNGCGMAHDAIPDLLGRVLSGSKYGVRQTRGKFGLGAKMALIW
SKKSTGVPIRIKTSHVKGIYIIDIYKNCPRIIEHKQKDNTENWIGTEMQVLVSGNWTTYK
SRVVQYLQQLAIITPYARLEMSYSNRSDEKKGMNLRFERRSEQMPSQAREVKHHPSSVNN
LLVQQLLENSKSKTLLKFLTGDLSGISPSVAKRLIERLGDAFEEDMSPAEMDDKQITRLV
QLLRSTDDLFKSPDGGCLSPLGEYNLNLGIQKVVEPEIIATARDKPGAYDGHPFIVEAAV
SLGGKEAKEGITVVRFANRIPLLFEGGADVATRVANSKIKWSSYKIDHKRDKIGVFVSIV
STKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRVHLAKRNALRDVKERKSRLLKYI
PDVSRSLFGILEGMHKRKLEEDSAIMDGIASGDITVDTFKQQLTEAVEENAHAGLGNDEN
EDGGKGGTAKAKKASGDDDRQSLFLVPIYEGPNDARSIIRHPLFDFYPMT
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccaagaaatcctcctccaaaaaggatgaaatccagcaatccaaatctcccgcc
gaattctttgccgaaaatcaatccatcgccggctttgacaacccggggaagtcactgtac
actacattacgtgaattggtggagaattcattggatgcatgcgagagtgtggatgttttg
cccgatattagcgtggttattgaggagatgacgcaggatcagtttaatgagatgaggggt
gttcctacgagtggtggtcccggaaagaagaagaagggcgttgacggcagtgatgatgct
gcggtgggtgatgcagaatcaggtgacaaagacaatggcaaaggtgtcaacgaaaagggt
gccaaaaaacgacgagcaggaggagacgcctacttcctcgtaacagtgcgagacaacgga
tgcggcatggcacacgatgcaattcctgatctactgggtagagtcctctccgggtccaag
tacggagtgcgtcaaactcgtggaaagtttggtttgggagcaaagatggctttgatatgg
agtaagaagagtactggagtacctattcggattaagacgagtcacgtgaagggaatttac
atcatagacatttacaagaattgccctcgtattatcgagcacaaacagaaagacaatact
gagaattggatcggaactgaaatgcaagtgctcgtcagcggaaactggacgacgtacaaa
tcaagagttgtgcagtacctccagcaattggcaatcattacgccatatgctcggttggaa
atgtcgtattctaaccgatcggacgagaagaagggaatgaacctgaggtttgaacgtcgt
tcggagcaaatgccatctcaagctcgcgaagtaaagcaccacccgagcagtgttaacaat
ctcttggtgcaacagctgctggaaaattccaaatccaaaacactgctcaaattcctcacg
ggagatctcagtggtatcagtccatctgttgcaaaacgtttgattgaacggttgggcgat
gcatttgaggaggatatgagtcctgctgagatggatgacaaacagattactcgtcttgtg
cagttgcttcgtagcactgatgatttgttcaagagcccagatggcggctgtttaagtccg
ttgggagagtacaatctcaatctaggcattcagaaggttgttgaacctgagatcatcgca
acggctcgagacaaaccaggagcgtacgatggacatcccttcatagtggaagctgcagta
tctttaggtggaaaagaggcaaaggaaggaatcaccgtcgttcggtttgcaaatcgtatc
cctctcctgtttgaaggaggggcagatgtagcgacacgagttgccaacagcaaaatcaaa
tggtccagttacaagatcgatcacaagagagacaagattggtgttttcgtgtcaattgtg
tctacaaaagtaccattcaaaggtactggaaaggagtacattggagacgacatcacagag
atacagctgagtgtgaaacgtgcacttcagaactgctgtcagcaactccgtgttcatttg
gcaaagcggaatgccttgcgagatgtcaaggaacgaaaatcccgtctgctgaagtacatt
cctgatgttagtcgatctttgtttggaatcttggagggaatgcacaagcgcaagcttgag
gaggattccgctatcatggacgggatcgctagtggagatatcacagtggacacattcaaa
caacaattgaccgaggcagttgaggagaatgcacacgcaggactcggaaacgacgagaat
gaggatggcggtaaagggggcacggcgaaggctaagaaagccagcggcgacgacgatagg
cagtcattgttcctcgttccaatttacgaaggaccaaatgatgcaaggtctatcattcgc
caccctttgtttgatttctaccctatgacatag
DBGET
integrated database retrieval system
