KEGG   Thalassiosira pseudonana: THAPSDRAFT_40669
Entry
THAPSDRAFT_40669  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
tps  Thalassiosira pseudonana
Pathway
tps03010  Ribosome
tps04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    THAPSDRAFT_40669
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    THAPSDRAFT_40669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:tps03011]
    THAPSDRAFT_40669
   04121 Ubiquitin system [BR:tps04121]
    THAPSDRAFT_40669
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tps04147]
    THAPSDRAFT_40669
Ribosome [BR:tps03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    THAPSDRAFT_40669
  Archaea
    THAPSDRAFT_40669
Ubiquitin system [BR:tps04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   THAPSDRAFT_40669
Exosome [BR:tps04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   THAPSDRAFT_40669
  Exosomal proteins of colorectal cancer cells
   THAPSDRAFT_40669
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Dsc3_N TBK1_ULD Ubiquitin_5 OTU1_UBXL UBL_UBAC1
Other DBs
NCBI-GeneID: 7451773
NCBI-ProteinID: XP_002290143
JGI: 40669
UniProt: B8C272
LinkDB
Position
5:562049..563156
AA seq 153 aa
MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGGKKRKKKVYTKPKKAKRVNKTIPLQTLKYYRVEDGGKVVRLRKY
SPVAGIGCFMAQHHDRYYCGKSGTTFLYEDMKE
NT seq 462 nt   +upstreamnt  +downstreamnt
atgcagatctttgtaaagacccttacgggtaagaccatcacgctcgatgtcgagccttcg
gacaccattgacaacgtcaagaccaagatccaagacaaggagggaatcccccctgaccaa
cagcgtctcatcttcgccggaaagcagcttgaggatggccgtaccctttctgactacaac
attcagaaggagtccactcttcaccttgtcctccgtcttcgtggaggaggaaagaagagg
aagaaaaaggtctacaccaagccaaagaaggcgaagcgtgtcaacaagaccattcctctc
cagaccctcaagtactacagggtcgaggatggaggaaaggttgtcaggttgaggaagtac
tctcccgttgccgggattggatgcttcatggctcagcatcatgataggtactactgtgga
aagagtggaaccaccttcctttacgaagacatgaaggagtaa

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