Thalassiosira pseudonana: THAPSDRAFT_40884
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Entry
THAPSDRAFT_40884 CDS
T01078
Symbol
RPA1
Name
(RefSeq) DNA directed RNA polymerase i, alpha subunit
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_40884 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_40884 (RPA1)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_40884 (RPA1)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
THAPSDRAFT_40884 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
7451111
NCBI-ProteinID:
XP_002290924
JGI:
40884
UniProt:
B8C4Z8
LinkDB
All DBs
Position
6:202272..208718
Genome browser
AA seq
1671 aa
AA seq
DB search
MANLNQAIIRHQPTSVQFGVYTDDEVRQRSVCEISSSVAYDALNTPLPRGLYDPLLGPTA
GGGGGASAYCITCGNVQNLCPGHFGHIELCVPVYHPLFFPKLLLFMKMKCLACHHFRLSK
RACRVFCTKLHLVDVGRMGEAMGLDEEMAALASKASVGGGDGKMSKQVKQEMMSSAAVLI
DELLDQKMALRPPDGQSAEEVTHTMHERAVRRKILKEFQQACTKCLKCANCNAFSNKIRH
DQFNKMFQVALPARNAKVSDVSREDFPANTKGKKKKKSTSSSTVDEEIDPTGGPISRKAT
VSTTKNIEASKQDNFMHALEVEAQCRLTWNNEPFLCSKFFGWGKGYTLFFLRAVPVPPSR
FRPPVIMGNMTVEHSQNFYLSKVLELNARIRSAFATIHELTQEEADLKNTDKGQANMLEI
WVDLQTTVNCFMDSTRDPKGTANNAPNGIRQLLEKKEGIFRKHMMGKRVNFACRSVISPD
PYIGTNEIGLPLYFAKTLTFPTPVTALNIAEMRKLVQRGPLQYPGAVWVEFPNGQRIDLS
KMKEGNRHAIAARLLADNGVVKVGRQLRDGDMVLMNRQPTLHKPGIMAHRVRVLFSPTQN
TLRMHYANCNTYNADYDGDEMNCHFPQSYLAAAESQFIAGTDLQFIVPTDGSPLRGLIQD
HVDAGVKLTCMNTFIEREVYQQLLFAALGSLPGLELIRSDANIELLPPAIRKPKELWTGK
QVISTLLNHLRKGNDRDEDPSFNFPGLSMERKAKTPATAFGASWNEHMVIVRDGDLVQGI
LDKAAFGASEFSLVHAVYEAYGPSRAGLLLNALGRLFTAYIQYYTGHSCRMEDLILTPDA
DEKRRQLVKVESDGGKVEIPPVAQNPKSKQPLKPHEKATVASKIGELLSGGDGKENAAAL
DGFMQSQVNPLASDIIKICLPDGLAVPFPENTFGLMTTTGAKGSMVNQSQVSCSLGQQAL
EGRRVPRMSSGRTLPSFAPYDPNPRADGFITDRFLTGVRPQEYYFHCMAGREGLVDTAVK
TSRSGYLQRCLIKHLEELKVSYDHTVRDGEGGVVQFVYGEDGIDPTKAAHLDCESRTFQF
LARNHESLKKRYPALPGSTLDIAVKDSRRAQETTPAESFHCEIIKPGVPDPIVSDTAREN
GAHRLGSSGACVSEHVANLASNAMKDTGVKKALENSGLSKEGFSALVAAKYSSALAHPGE
AVGSIAAQSIGEPSTQMTLNTFHLAGAGANVTLGIPRLREIIMTASKELKTPTMSIPLSE
SVSDREALRLTRYFSKVSLMDLLASHGGITVREVLEKGAGSNWERCYYVTLKLHPAERIN
EAFGLRLEDIAAVVTKTFIPKLARVMKAEMKRNETNEGYASIEVIGGASTDFMESDVSGG
ESSKSKASKRPKDDEYDDEVANDEDGVTGTRFGHRKEMTSYGDMDDDDKYIAKRSAKDDS
DEDEDNRLPAVITEGEESDDELESKSSNTARISRSKNSIILDPLRVDPSTCPLLMVGLVE
RAAETTIVRARPKINEGFVNNEEGRGRCLQTAGCNFEEMWSLDEGVVDHNKLVSNDIWGI
RCAYGVEAARMSIADQIRGVFAVYGISVDPRHLSLIADFMTYDGEYKPMNRIGMADISST
FLQMSFESTSVFMVDAALHKRNDPMMSPSANIVMGHPIRHGTGAFECIAKA
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctcaaccaagccatcatccgacatcaaccaacctccgtccaattcggcgtc
tacaccgacgacgaagtccgacaacgttccgtctgtgaaatatcctcttccgtcgcgtac
gatgccctcaacacacctctaccacgtggcttgtacgatccgctgttaggccctaccgct
ggaggtggaggcggtgcttcggcatattgcatcacttgcgggaatgtgcagaatttgtgt
cctgggcactttggccacattgaactgtgtgtgccggtgtatcatcctctcttctttcca
aagttgttactgttcatgaagatgaagtgtctagcgtgtcatcacttccgattgagcaag
cgggcctgtcgtgtcttctgtaccaagttgcatttggtcgatgtgggtaggatgggagag
gcgatggggctcgacgaagagatggccgctctggccagcaaggccagcgttggcggggga
gacggcaagatgagcaaacaagtcaagcaggaaatgatgtcctccgccgccgttctcatt
gacgaactgctagatcaaaagatggcacttcgccctccggatgggcagagtgccgaggag
gttactcacacgatgcacgagagggctgttcgtcgtaagattctcaaggagtttcagcag
gcgtgtaccaagtgcctcaagtgtgcgaattgcaatgcgtttagtaacaagattcgtcac
gatcagtttaataagatgtttcaggtggcgttgcctgcgaggaatgccaaggtaagtgat
gtgtctagagaagactttccagccaatacgaagggcaagaagaagaagaaatcaaccagc
agttccaccgtagatgaagagattgatcccaccggaggtcccatatcacgcaaagctacc
gtatccaccaccaagaacattgaggcttccaagcaagataacttcatgcatgcgttggaa
gttgaggcacagtgccgtttgacttggaataacgaaccgtttctttgttccaagttcttt
ggatggggtaagggatacactctcttcttcctacgtgctgtgcccgttccgccttctcgc
ttccgccctcccgtcatcatggggaatatgacagtggaacactctcaaaacttttacttg
agtaaggtgttggagttgaatgcgaggatccgtagtgcattcgcgactattcatgagttg
acacaggaggaagccgatttgaagaacacggacaagggacaggcgaatatgttggagata
tgggtggatttgcagacgacggtgaattgctttatggatagtacgagagatccaaaggga
acggcaaataatgctccgaatggtattagacagttattggagaagaaggagggtatcttc
agaaaacacatgatggggaaacgcgtcaacttcgcttgtcgttcggtcatctctcccgac
ccttacattgggaccaatgaaatcggtctgcctttatactttgccaaaacactcaccttc
cccaccccagtaacggcattgaacattgctgagatgcgaaagttggtacagagaggtcct
ttgcagtaccccggagctgtgtgggtggagtttccaaatgggcagaggatagatttgagt
aagatgaaggaagggaatcgtcatgcaattgcagcgaggttgttggctgacaatggtgtg
gtgaaagttggaaggcagttgagagatggagacatggttctcatgaatcgtcagcctact
ctacacaagcctggtatcatggctcacagagtccgtgtgctctttagtccaacgcagaat
actctacgaatgcactacgcgaactgcaacacatacaatgctgattacgatggcgacgaa
atgaattgccacttccctcaaagttatttggctgcagcggaatctcagttcattgcagga
actgacttgcaattcattgtgcctaccgacggatctcctttgcgtgggttaattcaggat
cacgttgatgcaggtgtcaagctcacgtgtatgaatacgtttattgaaagagaagtgtac
caacaactcttgtttgcagcactcggcagtcttcctgggttggagcttattcgatcggat
gccaacattgagcttcttccacctgctattcgtaagcctaaggagctctggacggggaag
caagtcatctcaactttgctgaatcatttgcggaaaggaaacgaccgcgacgaggacccg
tcgttcaacttcccgggactctcaatggaacgaaaggctaaaactccagctactgcattc
ggtgcatcgtggaatgagcacatggttattgttcgcgacggagatttggtacagggcatt
ttggataaggctgctttcggtgcttctgaattttctcttgtacatgcggtgtatgaagcg
tatggcccgagccgagcgggattgcttctcaatgctcttggacgtctgttcactgcttac
attcaatattacactggacattcttgccgaatggaggatcttatcttaacgccagatgca
gacgaaaagcgtcgtcagctcgtcaaggtggaatcagacggtggaaaggtcgaaattcct
ccggtggctcaaaatcccaagtccaagcaaccgttgaagccacacgaaaaagccacggtg
gcatcaaagattggagagctgctgtctggaggagacggaaaggagaatgccgcagcgctc
gatggtttcatgcagtctcaagtgaatccattggcatctgacatcatcaagatttgtttg
cctgacggacttgctgttccgtttccagagaatacatttggtctcatgacaacaactgga
gccaaagggtccatggtcaatcaatcgcaggtttcgtgttccttgggtcaacaggcttta
gagggtcgtcgtgttcccagaatgagcagtggcaggactctgccatcgtttgctccctac
gatcccaaccctcgtgcagatggattcattactgacagatttctcactggagttaggcct
caggagtattacttccattgcatggctggtcgtgaaggtttggtggatactgcagtcaag
acatctcgttctgggtacttgcagcgatgtctcatcaagcatttggaggagctaaaggta
tcttacgatcacactgttcgtgacggagaaggaggggttgttcaatttgtctatggagaa
gatggcattgatcctacgaaagcagcacacttggattgcgagtcaaggactttccaattt
ctagctcgaaatcacgagtctcttaagaagcgataccctgctcttcccggttcaactctt
gacattgccgtcaaggacagcagacgagcccaggagacgactcctgccgagtcatttcat
tgcgagattattaagccgggagttccagatcctatcgtttcagacacagcacgggagaat
ggagctcaccgcttaggatcatccggtgcatgtgtatctgaacatgttgccaaccttgca
tctaatgcaatgaaagacactggagtgaagaaggctcttgaaaactcgggcttgtccaag
gagggattcagtgcactggtggcagcaaagtacagctctgctcttgcacatcctggcgaa
gcagtaggatccattgcagcccaatccattggagagccgtcgactcaaatgactctcaat
acgttccacttggcaggagctggtgcaaacgtgacactcggtattccccgattgcgagag
atcatcatgaccgcatcaaaggaactcaagacgccaaccatgtctatccccttgagcgaa
tctgtcagtgaccgcgaggcacttcgtcttactagatacttttcaaaggtatctcttatg
gatcttcttgctagtcatggtggtatcactgtgagagaagtgttggagaagggagcagga
tccaactgggaacgttgctactatgtcactctcaaacttcacccagcagagcgtattaat
gaggcgtttgggctgagacttgaagacattgctgccgttgttacgaagacttttattcca
aagctagcccgagtgatgaaggctgagatgaaacgcaacgagacgaacgaaggatacgca
tccattgaagtcattgggggagcaagcactgatttcatggagtcggatgtcagtggagga
gagtcgtccaagtctaaggcgagcaagcgacccaaggacgacgagtacgatgacgaggtt
gccaatgacgaagacggagtaacgggaacgaggtttggtcatcgcaaagaaatgacttcc
tacggtgatatggatgacgacgacaagtacattgccaagcgttccgcaaaggatgattct
gatgaggatgaggacaatcgactgcctgctgtcatcacggaaggagaagaaagcgatgat
gaactcgagtccaaaagttccaatactgcgagaattagtaggagcaagaactcaatcatc
ttggaccccctccgagtcgatccttctacctgtcctctgctcatggttggtcttgttgaa
cgtgctgcagaaacaaccattgttcgtgctcgaccgaagattaatgaaggctttgtcaac
aacgaagaaggccgaggacgatgccttcaaacggctggatgcaactttgaggaaatgtgg
agcctcgacgaaggggttgttgaccacaacaaactcgtttcaaatgatatttggggcatc
cgttgcgcatacggagttgaagctgcgaggatgagcattgcggaccagattaggggtgtc
ttcgctgtctacggaatctctgtggatccaaggcacttgtctttgattgctgactttatg
acgtacgatggagaatacaaaccgatgaatcgtattggaatggcagatattagttctacc
ttccttcagatgagttttgagtcgacttccgtgttcatggtggacgcagcattgcacaaa
cggaatgatccaatgatgagtccaagtgccaacattgtcatgggacatcctattcgtcac
ggtactggggcatttgaatgcattgcaaaagcgtag
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integrated database retrieval system
