Thalassiosira pseudonana: THAPSDRAFT_40925
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Entry
THAPSDRAFT_40925 CDS
T01078
Symbol
RPB21
Name
(RefSeq) DNA directed RNA polymerase II, second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_40925 (RPB21)
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_40925 (RPB21)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_40925 (RPB21)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_40925 (RPB21)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_40925 (RPB21)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
THAPSDRAFT_40925 (RPB21)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
THAPSDRAFT_40925 (RPB21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7448430
NCBI-ProteinID:
XP_002291363
JGI:
40925
UniProt:
B8C598
LinkDB
All DBs
Position
6:complement(439103..443293)
Genome browser
AA seq
1196 aa
AA seq
DB search
MDLDDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQH
LVGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAP
LYVDVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQ
LADLGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENST
RPTSTLYIQMYQKGGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDL
TDGEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVG
TEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLT
KDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLT
YASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITT
GTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRR
MIDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQGVSPDQKKL
TWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASI
IPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFR
ELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKSSSVGSVGALN
SEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPMDAIANTPSRYTK
RDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRIPQVGDKFASRHGQKGTIGMTY
RQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGKVAVFQGCEGDATPFTDVHVDD
ISKRLHAMGYQRHGNEAMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAML
TRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQSNL
KKMTYECRTPTCVGLPYKICQVEIPYACKLLFQELQSMCISPRIYTEVRDTRDNSY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggatttggacgatatgcctgttacgcaggaggatgcttgggctgtgattagtgcctac
tttgaagaaaaaggactcgtccgacaacagctcgactccttcgacgaattcatccaaaac
accatgcaagaactagtcgacgactctggctccatccgcgtctcgcccgaaatccaacac
ctagtaggatacgacgaggcaaactttgacgaaacgatgaattccaccactaaaaaagta
ttcgaggtcaagttcggtcaagtctacctatcgaaaccgactacggtcgagaaagatggg
acggtaacgaatatgtttccgcacgaggctcgtttgaggaatttgacgtatgcggctcct
ctgtatgtggatgttaccatgaatgaatatcgggtggggaatgatgtcaatgtgggtgat
ccggcggaagatatgggtgagccggttagtaccgaggaggcaaggaaggagtttttgggg
tatgttcccattatgttacgatcgttgttttgtgtgctgagcgacaaggatgatgcacag
ttggctgatttgggagaatgtatttacgatcaggggggatactttgtgattaacgggtcg
gagaaggtgattgtggctcaggaacgcatgtccaataatcatgtgtacgcgttcaagaag
aaacagccttccaagttctcgtgggtgattgagacgaggtctcaggtggagaattcaacg
aggccgacgtctacgttgtatattcaaatgtatcaaaagggggggaagggggccattgag
ggaaatcagattaggagtacgttgccttatattcggacggatattccggtagttatcatc
tttagggcattggggtatgtggccgatagagacattattgagcatgtggtgtacgatttg
acagatggggaaatgatggatttgttccgtcctagtttggaggaggcatttgtgattcaa
aagcaggaggtggcgttggatttcattgggaggagaggatcggcacgggatgttacgaag
gatgatcgtattaggtatgctgcaggaattttgcagaaggaggtgttgccacatgtcggt
acggaagagcattgtgagacaaagaagggattctttttgggatatgctgtgcacaagcta
ctcatgtgcaagttggggcgtgcggatgaggatgatcgtgatcacttcgggaagaaacgg
ttggatttggctggtccgttgttggggggattgtttcgcgtgttgttcaggaagctgacc
aaggatgtgaggaagcatttgcagaggtgtttggatgaggggaagcatttcaacattggt
gcggcgatcaagtcgaatcatatctcggatggattgaagtacagtttggctactggaaat
tggggtgacaagggcaatacatcaaaggctggtgtctcccaggtgttgaacagattgacg
tacgcctcctccctctcccaccttcgtcgcagtaacactcctctcgctcgtactggaaag
caagccaaaccccgtcagcttcacaactctcactggggaatggtgtgtcctgccgaaacc
cccgagggtcaggctgtcggtttggttaagaacatggcactaatggcttacatcaccacg
ggtacatctcaggtgcctgtcatggagtttttggaggagtttagtactgaaaacttgacc
gacatcttgccttctgtcattgccgagccaaatacgtgtaagatcttcgtgaatggtaac
tgggtaggaatccatcgtgatcccaaacagcttgtgcacacgttccgttccctccgtcgt
atgattgatatcgatgccgaggtcagtatcgttcgtgacattcccgagtcggaggttcgt
atctacacggacgcgggacgtatctgtcgtccactcttcatcgtcactgatcaggagttg
gctatcaaaaagcatcacatttctcagttgcagggtgtgtcgcctgatcaaaagaaactc
acttggacggacttgctcatggaaggattggtggagtacgttgatacggaggaggaggaa
acaacaatgattgctatggagccgaaggatttggatatgactgtgggcgagccttattct
acaacctacacgcattgtgagatccacccttcaatgattcttggaatttgtgcttccatt
atcccgtttcccgatcacaatcaaagtccccgtaacacctaccaaagtgcaatgggaaag
caggccatgggtatctacgcctcaaactaccaagtccgtatggacactatggcccacgtc
ttgcattacccacagaaacctctctgtactactcgcgctatggagttccttcatttccgt
gagttgcctagtggagtgaatgtagtggtggcgattatgatttacactggttacaaccaa
gaggattccctcattatgaaccagagtgccatcgaccgcggactctttcgttcgtcgtac
taccgttgctacaacgatcaggagaagtcgagtagtgttggatcggtgggggctctcaac
tcggaattctttgaacgtcccgcctttgacaactgtaagggaatgaagactggggactac
ggcaagctagatgacgatggcttggtctctcccggaactcgtgtgtccggtgatgatgtt
ttgattggaaagactgcacccatggacgccattgccaatactccttctcgttacactaag
cgagattgcagtacttccatgaaagcaaatgagaatggtattgtggacaatgtgctcatc
agcacgacaaaggagggataccgtttcacaaaggttcgcattcgcaacgttcgtattcct
caagttggagacaagtttgcatcgaggcacggacaaaagggtaccatcggtatgacctac
cgtcaagaagacatgcccttcacctgcgaaggtatcgtccccgacattatcgtcaaccca
cacgctattccatctcgtatgaccatcgctcagttgattgaatgtatcttgggtaaagtt
gccgtgtttcagggttgtgagggagatgctactcctttcactgatgtccacgtggacgat
atcagtaaacgtttgcatgcaatgggttatcaacgtcatggaaacgaggccatgtatcaa
ggacacactggtcgtccattgaacgctcgtgtctttatcggtccaaccttctaccagcgt
ttgaagcatttggtcgacgacaaagtccactctcgtgctcgaggacccgttgccatgctc
acccgtcaaccactcgaaggtcgcgcccgcgacggaggtcttcgtatgggagaaatggaa
cgtgattgtctcatcacccacggatgtgccaatttcatccgcgatcgtttcttctgcaac
tctgatcagtatcgtattcacatttgcgaacgttgtggacttacggctcagagtaatttg
aagaagatgacgtacgaatgtaggacgcctacttgtgttggtttgccttataagatttgt
caggtggagattccgtatgcttgtaagttgttgtttcaggagctgcagtcgatgtgtatt
agtccgaggatttacactgaggttcgggatactagggacaactcttattga
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integrated database retrieval system
