Thalassiosira pseudonana: THAPSDRAFT_40995
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Entry
THAPSDRAFT_40995 CDS
T01078
Name
(RefSeq) predicted protein
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_40995
Enzymes [BR:
tps01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
THAPSDRAFT_40995
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
THAPSDRAFT_40995
Prokaryotic type
THAPSDRAFT_40995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Dec-1
Motif
Other DBs
NCBI-GeneID:
7443593
NCBI-ProteinID:
XP_002291031
JGI:
40995
UniProt:
B8C5K8
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All DBs
Position
6:719332..720973
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AA seq
468 aa
AA seq
DB search
MLRDVRTVDNWALLFAQSLAVQQKVPLRVVYALPPPPSMALTVRHGTFLLDGLKVVANEL
QEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLLEG
DDIPLYQVDTHNIVPVWIASPKREVGARTLRPKIHNVFGDYCCQFPKFQGNAHVKESGAE
GKGGLDWDDYESFLNMDHSVPHVGGMNAGHQVAMERFNNFCSSTQYGLKNFDSLRNDPNH
QSVCSNLSPWINHGHVSFQRLALDIRALKKHTNGTAAYIEEGVVRRELSDNFVYYTPDGY
DSLAGAADWARDSLTLHADDERENLYTWKELEKAETHDDLWNAAQLQLVREGGMHGFMRM
YWAKKVLEWTSSPAYALATAQYLNDRYAYDGNDPNGFVGVGWSIMGIHDMGWKERPIFGK
IRYMNYAGCKRKFKIDPFVARYQGAAQNAAKALTKSGGENLSGKKRKT
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgttacgtgatgtacgcacagttgacaattgggcattgctattcgctcaaagtctcgca
gtgcagcagaaggttccgttgcgtgtggtgtatgcattgcctcctcctcccagtatggca
ttgactgtacgtcatggaacgttcttgttggatggattaaaggtggttgcgaatgagttg
caggaggcaagtgtaccgtttgatatcttgtgtccgtcttctcgatcagaggttggcaaa
acaattcacactcattgcacggatgcatcacacgacgctctcgctgtggtgtgcgatatg
tgccctcttcgctatcctcgtcaatggacggaagaacaagctgtgccattgttggaagga
gatgatattccattgtaccaagtggacacacacaacattgttccagtttggattgcttcg
cctaaaagagaggtcggtgctcgtacattgaggccaaagattcacaatgtgtttggtgat
tactgctgtcaatttcccaagtttcagggaaatgctcacgtgaaggagagtggtgccgaa
ggaaagggtggtcttgattgggatgactacgaatctttcttgaatatggatcactctgtt
cctcatgtgggtggaatgaatgctgggcatcaagttgctatggagagattcaacaacttt
tgttcttcaactcaatatggactgaagaactttgacagccttcgtaacgatcccaatcat
caatcagtatgcagcaacctatctccatggatcaaccacggacatgtatcgttccaacga
ttggcactagatatacgtgctctaaaaaagcacaccaatggcacagcagcctacatcgaa
gaaggagtcgttcgccgagagctcagtgacaactttgtctactacactccagacggatat
gactcacttgccggagctgctgattgggcacgtgatagtttgacattacatgcagatgat
gagcgagagaacttgtacacgtggaaggagttggagaaggctgagacccatgatgatttg
tggaatgccgcacagttgcaactagtccgtgagggtgggatgcatggatttatgcggatg
tactgggcaaagaaggttcttgagtggacttcttctcctgcctatgcactggcaacagca
cagtacttaaatgacagatatgcttacgatggaaatgatccaaatggcttcgtcggtgtc
ggttggtcaataatgggaattcacgacatgggatggaaggagagacccatctttggaaag
atccgatacatgaattacgctggatgcaagaggaagttcaagattgatccgtttgttgct
cgttatcaaggtgctgctcagaatgcggctaaagctttgacgaagagtggaggagagaat
ctatcaggaaaaaaacgcaaaacatag
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