KEGG   Thalassiosira pseudonana: THAPSDRAFT_41025
Entry
THAPSDRAFT_41025  CDS       T01078                                 
Name
(RefSeq) histone deacetylase 1p
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03082  ATP-dependent chromatin remodeling
tps03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    THAPSDRAFT_41025
   03083 Polycomb repressive complex
    THAPSDRAFT_41025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tps03036]
    THAPSDRAFT_41025
Enzymes [BR:tps01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     THAPSDRAFT_41025
Chromosome and associated proteins [BR:tps03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     THAPSDRAFT_41025
   HDAC complexes
    Sin3A-HDAC complex
     THAPSDRAFT_41025
    BRAF-HDAC complex
     THAPSDRAFT_41025
    REST complex
     THAPSDRAFT_41025
    SHIP complex
     THAPSDRAFT_41025
    MiDAC complex
     THAPSDRAFT_41025
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     THAPSDRAFT_41025
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    THAPSDRAFT_41025
  Chromatin remodeling factors
   NuRD complex
    THAPSDRAFT_41025
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 7442338
NCBI-ProteinID: XP_002291445
JGI: 41025
UniProt: B8C5S2
LinkDB
Position
6:complement(896520..898040)
AA seq 450 aa
MEPQSNPLSTDPTTLEASIPKGTSRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVN
YGLYKQMDVFRPRLIQSNAMTRFHSDDYINFLKVITPDNMTDFTRQLQRFNVGEDCPVFD
GLFEFCQLYTSGSIGGAARLNEDNADVVINWSGGLHHAKKAEASGFCYINDCVLAILELL
KKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDTGYADGKNYAI
NFPLNDGMDDEAYHSIFKPVMSKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHAEC
VNFVRSFNIPMLVLGGGGYTLRNVPRCWTYETAVVVGEPVNENLPFNDYYEYFGPDYTLH
LPVSNMENLNSKEYLSKTKNQLIDILRDVEPVPGTQIQTGQVESQLNPRGVSMEIDEPSK
SDGGNGSNNPDERGDSRLDGGKEHPAELAS
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggagccccaatccaaccccctcagtaccgacccaaccactctcgaagcctccatcccc
aagggcacctcccgccgcgtctcctacttctacgacgccgaggtgggcaactaccactat
ggccaaggccaccccatgaaaccccaccgcgtccgcatgacacacaacctcgtcgtcaac
tacggcctctacaaacaaatggatgttttccgccctcgtctcattcaatccaatgccatg
acgaggtttcatagtgacgattacatcaattttttgaaggtgattactcctgataacatg
acggattttaccaggcagcttcagaggtttaatgtgggggaggattgtccggtgtttgat
ggactatttgagttttgccaattgtacaccagtggaagtattgggggtgcggcacggttg
aatgaggataatgccgatgtggtgattaattggagtggaggacttcaccatgccaagaag
gcggaggcttcgggattttgctacatcaatgattgtgtgttggctattctcgagctgttg
aagaagcatgagagggtgctctatattgatattgatatccatcatggagatggtgtcgag
gaggcgttctactcgacgaaccgtgtcatgaccgtgtcatttcacaagtttggagagtac
ttccctggtacgggtgatgtgctagacactggatacgccgacgggaagaattacgccatc
aactttcccctcaacgacggtatggacgacgaagcataccactccatcttcaaaccggta
atgtcaaaggttatggagcacttcgctcccggagcagtggtcttacagtgtggtgccgat
tctctttcgggagatcgtcttggatgcttcaacctcagtgtcaagggacatgctgagtgt
gtcaactttgtgcgaagcttcaatatcccaatgttggtactcggaggagggggatacact
ctccgtaacgtcccgagatgctggacgtacgaaacagccgtggtggtgggagaaccggtg
aatgagaacttgcccttcaatgactactatgaatactttggtccggattacacccttcac
cttcccgtgtcgaatatggagaacctaaactccaaagagtacctctccaaaacgaaaaat
caactaatcgacattttgagggacgtggagccagtacctggtactcagattcagacggga
caggtggagagtcagttgaatcctcggggtgttagtatggaaattgatgaaccttcgaag
agtgatggagggaatggaagcaataatccggatgagaggggggatagtcggttggatgga
gggaaggagcaccctgccgagttggcgtcgtga

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