Thalassiosira pseudonana: THAPSDRAFT_41025
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Entry
THAPSDRAFT_41025 CDS
T01078
Name
(RefSeq) histone deacetylase 1p
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03082
ATP-dependent chromatin remodeling
tps03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
THAPSDRAFT_41025
03083 Polycomb repressive complex
THAPSDRAFT_41025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_41025
Enzymes [BR:
tps01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
THAPSDRAFT_41025
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
THAPSDRAFT_41025
HDAC complexes
Sin3A-HDAC complex
THAPSDRAFT_41025
BRAF-HDAC complex
THAPSDRAFT_41025
REST complex
THAPSDRAFT_41025
SHIP complex
THAPSDRAFT_41025
MiDAC complex
THAPSDRAFT_41025
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
THAPSDRAFT_41025
Heterochromatin formation proteins
Other heterochromatin formation proteins
THAPSDRAFT_41025
Chromatin remodeling factors
NuRD complex
THAPSDRAFT_41025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
7442338
NCBI-ProteinID:
XP_002291445
JGI:
41025
UniProt:
B8C5S2
LinkDB
All DBs
Position
6:complement(896520..898040)
Genome browser
AA seq
450 aa
AA seq
DB search
MEPQSNPLSTDPTTLEASIPKGTSRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVN
YGLYKQMDVFRPRLIQSNAMTRFHSDDYINFLKVITPDNMTDFTRQLQRFNVGEDCPVFD
GLFEFCQLYTSGSIGGAARLNEDNADVVINWSGGLHHAKKAEASGFCYINDCVLAILELL
KKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDTGYADGKNYAI
NFPLNDGMDDEAYHSIFKPVMSKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHAEC
VNFVRSFNIPMLVLGGGGYTLRNVPRCWTYETAVVVGEPVNENLPFNDYYEYFGPDYTLH
LPVSNMENLNSKEYLSKTKNQLIDILRDVEPVPGTQIQTGQVESQLNPRGVSMEIDEPSK
SDGGNGSNNPDERGDSRLDGGKEHPAELAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggagccccaatccaaccccctcagtaccgacccaaccactctcgaagcctccatcccc
aagggcacctcccgccgcgtctcctacttctacgacgccgaggtgggcaactaccactat
ggccaaggccaccccatgaaaccccaccgcgtccgcatgacacacaacctcgtcgtcaac
tacggcctctacaaacaaatggatgttttccgccctcgtctcattcaatccaatgccatg
acgaggtttcatagtgacgattacatcaattttttgaaggtgattactcctgataacatg
acggattttaccaggcagcttcagaggtttaatgtgggggaggattgtccggtgtttgat
ggactatttgagttttgccaattgtacaccagtggaagtattgggggtgcggcacggttg
aatgaggataatgccgatgtggtgattaattggagtggaggacttcaccatgccaagaag
gcggaggcttcgggattttgctacatcaatgattgtgtgttggctattctcgagctgttg
aagaagcatgagagggtgctctatattgatattgatatccatcatggagatggtgtcgag
gaggcgttctactcgacgaaccgtgtcatgaccgtgtcatttcacaagtttggagagtac
ttccctggtacgggtgatgtgctagacactggatacgccgacgggaagaattacgccatc
aactttcccctcaacgacggtatggacgacgaagcataccactccatcttcaaaccggta
atgtcaaaggttatggagcacttcgctcccggagcagtggtcttacagtgtggtgccgat
tctctttcgggagatcgtcttggatgcttcaacctcagtgtcaagggacatgctgagtgt
gtcaactttgtgcgaagcttcaatatcccaatgttggtactcggaggagggggatacact
ctccgtaacgtcccgagatgctggacgtacgaaacagccgtggtggtgggagaaccggtg
aatgagaacttgcccttcaatgactactatgaatactttggtccggattacacccttcac
cttcccgtgtcgaatatggagaacctaaactccaaagagtacctctccaaaacgaaaaat
caactaatcgacattttgagggacgtggagccagtacctggtactcagattcagacggga
caggtggagagtcagttgaatcctcggggtgttagtatggaaattgatgaaccttcgaag
agtgatggagggaatggaagcaataatccggatgagaggggggatagtcggttggatgga
gggaaggagcaccctgccgagttggcgtcgtga
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