Thalassiosira pseudonana: THAPSDRAFT_416
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Entry
THAPSDRAFT_416 CDS
T01078
Symbol
rfC_3
Name
(RefSeq) replication factor C 37 KD subunit
KO
K10755
replication factor C subunit 2/4
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_416 (rfC_3)
03410 Base excision repair
THAPSDRAFT_416 (rfC_3)
03420 Nucleotide excision repair
THAPSDRAFT_416 (rfC_3)
03430 Mismatch repair
THAPSDRAFT_416 (rfC_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_416 (rfC_3)
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_416 (rfC_3)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_416 (rfC_3)
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
THAPSDRAFT_416 (rfC_3)
DNA Replication Termination Factors
ELG1-RFC complex
THAPSDRAFT_416 (rfC_3)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
THAPSDRAFT_416 (rfC_3)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
THAPSDRAFT_416 (rfC_3)
Check point factors
HRAD17(Rad24)-RFC complex
THAPSDRAFT_416 (rfC_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
ResIII
Rad17
RCF1-5-like_lid
AAA_16
RuvB_N
AAA_5
AAA_22
AAA_2
AAA_11
SLFN-g3_helicase
AAA_30
AAA_24
AAA_14
Mg_chelatase
AAA_assoc_2
nSTAND3
ATPase_2
PhoH
AAA_19
DUF815
RNA_helicase
AAA_18
AAA_25
IstB_IS21
AAA_33
AAA_28
TIP49
AAA_7
ABC_tran
Sigma54_activ_2
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
7443775
NCBI-ProteinID:
XP_002289945
JGI:
416
UniProt:
B8C099
LinkDB
All DBs
Position
4:complement(1907051..1908291)
Genome browser
AA seq
346 aa
AA seq
DB search
MADTSTTLQATTSTTPWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTG
KTSVALALCRQLFEPSQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTKKYPNPP
FKIIILDEADTVTRDAQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLP
VESMKARIKYIAHEEHCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVI
KKDSIAEMAGLPPPALIDGLIEVLRTGKFDDMKKYVMDIVLDGYSAEYLLSALMAKIIVL
DGVEDEAKAKIAIQVATSDKNLIDGSDETLQLLTVCSLALQCMKTR
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacatccactacactgcaagcaaccacctccaccacgccctgggtagaacgc
taccgtcccaaatcccttcaggatgtctctcatcagggtgaaatcatctccacgttaaag
aatgcggtggagacgaaccgtcttcctcacttgctcttttatggacctcctggaacaggt
aaaacgtccgtggcgctggccctctgccgtcagctcttcgaaccaagccaactccgccgt
cgggtcctcgaactcaatgcctccgatgaacgcggcatcagcgtcgtccgtgacaaaatc
aaacactttgccagccttgccatcgacaccgaaacaacgaagaagtaccccaatcctccc
ttcaaaatcatcatcttggacgaagccgacacggtcacccgcgacgcccaagcggctctc
cgtcgagtcattgaagcatattccaaagtaacacgcttcatactcatttgcaactacgtc
acacgcatcattgaaccgctcgccagtcgttgtgccaaattccgcttccagccattgccg
gtggaaagcatgaaggctcgtattaagtacattgcccatgaggagcattgtcaatttgag
gagggaaaggaggaagaggtggtggatgagatattgacgttgagtcagggggatatgagg
agggcggtgacgacactgcaatctgcacattcattgtcggggggtgcgggggaggtgatt
aagaaggattctattgcggagatggcgggtttgcctcctcctgctcttattgatgggttg
atcgaggtgcttcggacggggaagtttgatgacatgaagaaatatgtgatggatattgtg
ctggatgggtactcggctgagtatttgttgagtgcacttatggcaaagatcattgtgttg
gatggggtggaggacgaagccaaggcaaagattgctattcaggtggctacatcagacaag
aacttgattgatggatcggatgagactctgcaactgttgaccgtgtgttctttggcgttg
caatgtatgaagacgaggtaa
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