Thalassiosira pseudonana: THAPSDRAFT_41687
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Entry
THAPSDRAFT_41687 CDS
T01078
Symbol
APB1
Name
(RefSeq) beta subunit of tetrameric clathrin adaptor complex AP1
KO
K12392
AP-1 complex subunit beta-1
Organism
tps
Thalassiosira pseudonana
Pathway
tps04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
THAPSDRAFT_41687 (APB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_41687 (APB1)
Membrane trafficking [BR:
tps04131
]
Endosome - Golgi transport
Others
AP-1 complex
THAPSDRAFT_41687 (APB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Cnd1
B2-adapt-app_C
HEAT_2
HEAT
HEAT_GCN1
HEAT_MROH2B_C
PDS5
TOR1L1_N
UNC45-central
Sec7-like_HUS
VPS15-like_hel
Arm_2
Serum_albumin
Motif
Other DBs
NCBI-GeneID:
7449283
NCBI-ProteinID:
XP_002292207
JGI:
41687
UniProt:
B8C7W7
LinkDB
All DBs
Position
9:258734..261782
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AA seq
920 aa
AA seq
DB search
MAPKDTASSGGSDSRFFNTPKKGEMHELRMELQSTDRTIKVDAVKKVIASMTVGKDVSTL
FTDVLNCAQTANIELKKLVYLYLINYAKSQPELTLLAVNTFVKDANDTNPLIRALAVRTM
GCIRVDRITEYLCEPLSRALRDNDPYVRKTAAVCVAKLYDIAPELVQERGFIETLHDLIS
DSNPSVVANGVAALSEISETSGRDVMKISASVLQKLLAALNECTEWGQVFILDSLAKYTP
ADAREAEGIIERVTPRLQHANSAVVMSAVKVILSYMDVMGGSGGAHADSIRALTRKLAPP
LVTLLNSEPEIQYVALRNINLIVQKRSNILENEIKVFFCKYNDPIYVKMEKLEIIIKLVS
EKNIDQVLLELKEYATEVDVDFVRKSVSAIGRCAVKLERAAERCIGVLLELIQTKVNYVV
QESVIVIKDIFRRYPNRYESIIATLCDNLDTLDEPQAKASMIWIIGEYAERIDNADELLD
TFLETFEEEDPAVQLQLLTATVKCFLKDPENCQEMVQRVLDLATEESDNPDLRDRGFIYW
RLLSTDPEAAKLVVLGDKPVIEDDTFRLEPNLLNVLVGQIATLSSIYHKPPEAFVVRAKR
STTNGDDLGVGDVGEEIEEGEEEDYEDENDVNGGGGDLLDMGGLSVNDNTSPSYSASGLD
NDLFGAPSPVANEPEARMSKVCAPEKSGGIELWAGFRQVNGAVKLELDVRNISSTVPVST
LAIQLNKNSFGLSPATQQIVCNPPVPIGGSGKNSVELVVNPNMLVAAPAGQPASPQIQVA
IKNMATGLVFYFAANFAFEALFTPDGALERTTFIESWKSIDDKKELYGTVSDLPPASTDI
DQVAAKFKAHRIFLIARRPVPNAEGQEVAYFSMKTSTGMVFMAELTFKKGVNAAKVCLKT
ENIAYGVQAKVALESLLRAQ
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaagatacggcctcctccgggggctcagactctcgcttcttcaacactccc
aaaaagggtgaaatgcacgagctccgcatggaactccaatccaccgaccgcaccattaaa
gtagacgctgtcaaaaaagtaatcgcctccatgaccgtcgggaaagacgtctccacgctc
ttcaccgacgttctaaactgtgctcaaactgccaacattgagttgaaaaaattggtatat
ttatatctcattaactatgccaagagtcagcctgaactaaccttgttggcggtcaacacc
ttcgtaaaggatgcaaatgatactaaccccctcattcgtgccttggccgttaggaccatg
gggtgtattcgagtggatcgtattacggagtacttgtgtgaacctctcagcagggcattg
agggataatgatccatacgtgagaaagacggcggccgtttgtgtcgccaagttgtatgat
attgctcctgagttggtacaggagaggggattcatcgagacgcttcatgatttgatctcc
gattctaatccaagcgttgttgccaatggtgtggctgccttgagtgaaatctcggaaact
tccggaagggacgtgatgaagatttctgcctccgtgttgcaaaaactgttggcggcgtta
aacgagtgtaccgagtggggacaggtgtttattctcgactcgttggccaagtacactccc
gcggatgcacgtgaggccgagggcattattgaacgtgtgactccccgtttgcagcatgcc
aatagtgcggtggttatgagtgccgtcaaggttatcttgtcgtatatggatgttatgggg
ggaagtgggggagctcacgcagatagtattagggcgttgactaggaagctcgcccctcca
ttggtgactttgctcaactcagagccggagattcagtacgttgccttgaggaacattaac
ttgattgtgcagaagcgctccaacattcttgagaatgagatcaaggtcttcttttgcaag
tacaatgatcccatttatgtcaagatggagaagctagagatcataattaagcttgtttcg
gagaagaacattgatcaagttcttcttgagttgaaggagtatgccactgaggtggatgtg
gactttgttcgcaagtctgtgtctgctatcggacgttgtgccgtcaagttggagagggct
gcagagcgttgcattggggtgttgctcgagcttatccagaccaaggtcaactatgttgtg
caggagtctgtgattgtcatcaaggatatcttccgtcgttaccccaacaggtacgaatcc
atcattgccactctttgtgacaaccttgatactttggatgagcctcaggccaaggcttcg
atgatttggattattggagagtatgctgaacgtattgataacgctgatgagttgttggac
accttcttggagacttttgaggaggaggaccctgctgtacagttgcagctgttgactgct
accgtcaagtgtttcctcaaagatcccgagaactgccaggagatggtgcagagggtgttg
gacttggccactgaggagagtgataatcctgacttgagggaccgcggtttcatctattgg
aggttgttgtctaccgatccggaagctgccaagctggtcgtcttgggggataagcctgtg
atcgaggatgatacctttaggttggagcctaacttgttgaacgttttggttgggcagatt
gctaccttgagtagtatctatcacaagcctcctgaggcatttgtggttcgtgccaagcgc
agtactactaatggagatgatttgggcgtcggagatgtgggcgaagagattgaggagggt
gaggaggaagactacgaggatgagaatgatgtgaacgggggtggaggggatcttctcgat
atggggggactttctgtcaatgacaacaccagtccttcctattctgcttctggattggac
aatgatctctttggtgctccttctcccgtcgccaatgaacccgaagctcgcatgtctaaa
gtatgtgctcctgagaagagtggtgggattgagctttgggcaggattccgtcaggtcaat
ggggccgtcaaactcgagttggacgttcgcaacatctcgagcactgtccccgtctccacg
ttggctattcaactcaacaaaaactcgtttgggttgagccctgctactcagcagattgtc
tgcaatcctcctgttccaattgggggttcaggaaagaattccgtggaactcgtcgtcaat
cccaacatgttggtggctgctcctgccgggcagcctgcctctcctcagattcaggtggca
atcaagaacatggccactggtcttgtcttttactttgctgccaactttgccttcgaggct
ctcttcacccccgatggagcattggaacgtaccaccttcattgaatcttggaagtccatt
gatgataagaaggagctctatggcaccgtgtctgatttgcctcccgcgtctaccgacatt
gatcaggttgctgcaaagttcaaagcccatcgcatctttttgattgctcgtcgtcctgtg
ccaaacgccgaaggtcaggaggtggcttatttctccatgaagacatctaccggaatggtc
ttcatggccgagttgacgttcaagaagggtgtgaacgccgccaaggtgtgcctcaagacg
gaaaatatcgcgtatggggttcaagccaaggttgcattggagtctttgcttcgtgctcag
taa
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