Thalassiosira pseudonana: THAPSDRAFT_41829
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Entry
THAPSDRAFT_41829 CDS
T01078
Name
(RefSeq) translation elongation factor alpha
KO
K03231
elongation factor 1-alpha
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_41829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_41829
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_41829
03012 Translation factors [BR:
tps03012
]
THAPSDRAFT_41829
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_41829
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_41829
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
THAPSDRAFT_41829
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
THAPSDRAFT_41829
Translation factors [BR:
tps03012
]
Eukaryotic type
Elongation factors
THAPSDRAFT_41829
Membrane trafficking [BR:
tps04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
THAPSDRAFT_41829
Exosome [BR:
tps04147
]
Exosomal proteins
Proteins found in most exosomes
THAPSDRAFT_41829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D2
GTP_EFTU_D3
GTP_EFTU_D4
MMR_HSR1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
7451081
NCBI-ProteinID:
XP_002292812
JGI:
41829
UniProt:
B8C995
LinkDB
All DBs
Position
10:complement(388486..390304)
Genome browser
AA seq
453 aa
AA seq
DB search
MSGKEHLSVVVCGHVDAGKSTTCGHLIFKQGGISQREMDKLQATAEEKGKSSFGFAYYLD
TCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNMITGSATADVGLLLVPAEKG
GFEAAIAKADAKLGVEEGQTRQHARLLYLLGVEQIIVGINKMDACNWDEGRFNEIKDEFQ
KMLQMIGFKPKKVPFIPYSGFNGDNLVEKTDKAPWYNGWEANINPKTVVKGFTLVECLNN
FIQPPKRHPELPVRLPISNIYNIKGVGQIICGTVEQGTLTPGDVIGIVPSNLRDKKVFSI
EQHKKQLEKACPGDSVGLSIKGIAKDEKVQPGDIIYVQKEGDLKPIKSFTAMVAVQEHPG
VLKPGYAPVVFCRTAKVACKMTKILWKMGKKTGGQKVDNPPELSQFENAEVEFEPSQPLF
VEPFEKCAALGRIAVMDSNRLKMLGKVTGVTSV
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaaaagaacatctttcagtcgttgtctgcggacacgtcgatgccggaaagtcc
accacctgtggacacttgatcttcaagcagggaggaatctcccagcgtgagatggacaag
cttcaggccaccgccgaagagaagggaaagtcttctttcggattcgcctactaccttgac
acctgtaaggaggagcgtgagcgtggagttaccatccagtgtaacaccaaggagttcttc
actgaaaagtaccactacaccattgtcgatgctcccggacacaaggattacatcaagaac
atgatcactggatctgccaccgctgatgttggtcttcttcttgtgcctgccgagaaggga
ggtttcgaggccgctatcgccaaggccgatgccaagcttggagttgaggagggacagacc
cgtcagcacgcccgtcttctttaccttcttggagttgagcaaatcattgttggaatcaac
aagatggacgcctgcaactgggacgagggacgtttcaacgagattaaggacgagttccag
aagatgcttcaaatgattgggttcaagcccaagaaggttcctttcatcccctattccgga
ttcaacggagacaaccttgttgagaagaccgataaggctccctggtacaatggatgggag
gccaacatcaaccccaagaccgttgtcaagggattcaccttggttgagtgcttgaacaac
tttatccagccccccaagcgtcaccctgagcttcccgtccgtcttcccatttccaacatt
tacaacattaagggagttggacagatcatctgcggaaccgtcgagcagggaaccctcacc
cccggtgatgttatcggaattgtcccctccaacctcagggacaagaaggtcttctccatc
gaacaacacaagaagcaactcgagaaggcttgccccggagactctgtcggtctttccatc
aagggtattgccaaggacgagaaggtccagcctggagatatcatctacgtccagaaggag
ggagatctcaaacccatcaagtccttcactgccatggttgccgtccaggagcaccccggt
gttctcaagcccggatatgcacccgttgttttctgccgtaccgccaaggttgcctgtaag
atgaccaagatcttgtggaagatgggaaagaagactggaggacagaaggtcgacaaccct
cctgagctttcgcagttcgagaacgccgaggttgagttcgagccaagtcagcctcttttc
gttgagcctttcgagaagtgtgcagctcttggacgtattgccgtaatggactccaacaga
ttgaagatgcttggaaaggtcactggagttacttctgtttga
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