Thalassiosira pseudonana: THAPSDRAFT_4224
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Entry
THAPSDRAFT_4224 CDS
T01078
Name
(RefSeq) predicted protein
KO
K04523
ubiquilin
Organism
tps
Thalassiosira pseudonana
Pathway
tps04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
THAPSDRAFT_4224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_4224
03051 Proteasome [BR:
tps03051
]
THAPSDRAFT_4224
Membrane trafficking [BR:
tps04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
THAPSDRAFT_4224
Proteasome [BR:
tps03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
THAPSDRAFT_4224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PUB
ubiquitin
UBQLN1
STI1-HOP_DP
DUF5507
Motif
Other DBs
NCBI-GeneID:
7447459
NCBI-ProteinID:
XP_002289203
JGI:
4224
UniProt:
B8C198
LinkDB
All DBs
Position
4:<501970..>503497
Genome browser
AA seq
465 aa
AA seq
DB search
MSDSQDNKSLTLYLSLTSSPSAPRIPLTLPPTSNASTLRRLASAATNIPLDSLKLIFRGR
VIGEKSEGDVGLEYKLEDESVIHVMGKPPVAAAGSGGGGAAAAAGTNIAGASVSMNSSTP
ATSNTSSPLASAMLTLRTNNNSETYRTALATADKLLSNIISHPMEEKYRSIKKSNPAFHK
RLGGVSGGEALLLASGFVVESGGGVESYVLRPSADAWPRLVAAGEEIQRVLTEANATSAS
SPSATYDSNNNNNAATSGGGAGGMSNLFPGGIPSNAMGGSLGGPGMEAAMQSMLSNPQML
QNMMSNPMVQQMMRNDPRFANNPMLQQQIETLASNPQMIQQMSQLMSDPGMRANMSRMMQ
QQQQQQSGGGGGDPFAGGPDAMRRQMEQFQQLSQQFRGASGTFGSGNNATGTSTGQSGSG
AAGTSNATGGNNASSSGGGGGGGGDDQMTEEEMIAEAIRRSMEES
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactcccaagacaacaaatcactaaccctctacctatcactaacctcctccccc
tccgcacctcgcatccccctcactctcccacccacctccaacgcctccaccctccgccgc
ttagcatcggctgccacgaacattccgttggattcgctgaagcttatatttcgcggacgg
gtgattggtgagaagagtgagggtgatgttggattggagtacaagttggaggatgagagc
gtgattcatgtcatgggcaagccgccggttgcggctgctgggagtggcggcggaggggct
gctgctgctgctggtacgaacattgccggcgcctccgtctcaatgaactcatccacccca
gcgacatccaacacatcatctcctctagcatccgccatgctcaccctccgcaccaacaac
aactccgaaacctaccgtactgccctcgccacggccgacaaactactctccaacatcatc
tctcatccaatggaagaaaagtaccgttccattaaaaagtcaaatccagcctttcataaa
cgactcgggggtgtttctggtggagaggcgctgctgttggcttctggatttgtcgtggag
agtggtgggggtgtggagagttacgtgttgagacccagtgccgatgcgtggccgaggttg
gtcgcggcgggagaggagattcaacgcgtcttgacggaggcgaatgcaacatctgcttct
agtccttctgcaacctacgacagcaacaacaacaacaacgctgctacttctggtggtgga
gctggtggaatgtctaatctgtttccggggggtattccgagtaatgccatgggaggatca
ttgggaggaccggggatggaggctgcgatgcagtccatgttgagtaatcctcagatgctt
cagaatatgatgagtaatccaatggtgcaacaaatgatgcgcaatgatccccgttttgcc
aacaacccaatgctccaacaacaaattgaaacactcgcttctaatcctcaaatgattcaa
caaatgtcgcagttgatgagtgatcctggtatgagagccaacatgtcacgaatgatgcaa
caacaacaacagcagcagtcaggtggtggaggaggggatccgtttgcaggaggccctgat
gcaatgcgtagacagatggaacaatttcagcaattgtcgcaacagtttcgaggagcgagt
ggtacctttggaagtggaaacaatgcaactggtacatctactggacagagtggcagtggt
gctgcgggaacatccaatgctactggaggaaataatgcatcgtcgtctggaggaggagga
ggaggaggaggagatgatcaaatgacggaagaagaaatgattgccgaggctattagacgt
tcaatggaagaatcttag
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