Thalassiosira pseudonana: THAPSDRAFT_42282
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Entry
THAPSDRAFT_42282 CDS
T01078
Name
(RefSeq) RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_42282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_42282
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_42282
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THAPSDRAFT_42282
Spliceosome [BR:
tps03041
]
Complex A
U2 snRNP components
U2 related factors
THAPSDRAFT_42282
Complex B
THAPSDRAFT_42282
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
THAPSDRAFT_42282
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
Helicases
THAPSDRAFT_42282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
AAA_16
AAA_30
AAA_11
nSTAND3
PhoH
ATPase
TsaE
T2SSE
SecA_DEAD
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
7450521
NCBI-ProteinID:
XP_002293649
JGI:
42282
UniProt:
B8CBV2
LinkDB
All DBs
Position
13:complement(939444..941817)
Genome browser
AA seq
720 aa
AA seq
DB search
MGGTDRKRKLNLSTDETVKQQKSTLDARQSSSINPWTSQPYSSRYQSILQTRLKLPVYQF
QSQLLEAVASNQIVVVEGETGSGKTTQIPQFLVEVGYATPGNNCVACTQPRRVAATSIAT
RVADEMDVTLGGTVGYTIRFEDVSSEETVLKFLTDGMLLREAMNDPLLSRYSVIVLDEAH
ERTLATDVLMGLLMEVIPKRTKGSKYGELKVVVMSATLDAAKFQEYFNGAPLLKVPGRTF
PVEVFYTAEPERNYVEAAVRTAIQIHKCEGPGDILVFLTGEQEIEQACEEIRGGAMDMGK
DAPELVVYPLYSSLPPAQQRKIFSAAPGPRVVGGPPGRKVVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEQSFHNDLQET
TYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGDLTD
LGRQMAELPLDPQLSKMLISSPDYNCSEEIVSIVAAMSVPQIFMRPREAAKAADEAKAQF
VDATSDHITLLNAYAAYEEVPVAERKQWCWDNFINDRSISSAESVKKQLRGIMTRLDIPL
LTCRGKNGNYDTNAIRMTLTTAMYMQVAYLQRAGNYLTVKDNQIVYIHPGSSIDGKPQWV
LFEEFALTSKNYIRTVTTTKGEWLVEMAPHYFDLENFPECEAKDELVLEYKKMARRMTSK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggggggaacagatcgcaaacgcaaactcaatctatccaccgacgaaacggtcaaacaa
caaaaatcaaccctcgacgcccgtcaatcctcctccatcaatccatggacctcccagccc
tactcctcccgctatcaatccatcctccaaactcgtctcaaactaccagtatatcagttc
caatctcaactgctcgaggcagtggcatccaatcaaattgtcgtggtggagggtgaaacc
ggttcgggaaagaccactcaaattccacaatttttagtcgaggtggggtatgccactccc
ggtaacaattgcgttgcgtgcactcagccgaggagggtagcagcgactagtattgccact
cgtgtggccgatgagatggatgttacgttggggggtacggtggggtatactattcgtttt
gaggatgttagttcggaagagactgtgctcaagtttttgacggacggtatgttgttgagg
gaggcgatgaatgatccgctgctcagtaggtattcggtgattgtattggatgaggctcat
gaacggacactggctactgatgtattgatggggttgttgatggaagttatccccaagaga
accaaggggagtaaatacggagagttgaaggtggtagtcatgtctgcgacgttggacgct
gcaaagtttcaagagtacttcaacggagccccccttctcaaagtgccgggacgtaccttc
ccagtggaagtattctacacagccgaaccagaacgaaactacgtcgaggcagcagttcgg
acggcaatccaaatccacaaatgcgaaggaccgggtgatatcctcgtattcctaacgggg
gaacaagagattgaacaggcatgtgaggagatacgagggggggctatggatatggggaag
gatgcgccggagttggtggtgtatccgttgtatagttcgttgccgccggctcagcagagg
aagatttttagtgcggctcccgggccgagggtggtgggagggcctccggggaggaaggtt
gtggtttctacaaatattgcagaaacatccctcaccatcgacggtattgtctacgtcatt
gatccaggattcagcaaacaaaaagtatacaaccctcgtatccgcgtagaatccctcctg
gtcagtccaatctcacgagcctcggcacgtcaaagaagcggacgtgcaggtcgtacccga
ccaggaaaatgctttcggttgtatacggaacagagctttcacaatgatttgcaagagacg
acgtatccagagattttgcgatcgaaaatgagtaacgtggtgttgacgttgaagaagttg
ggtattgatgatttggttcattttgatttcatggatcctcctgctccagagacgctcatg
agagcattggaggtattgaactacctgggagcattggatgacgagggagacttgactgat
ttaggacgtcaaatggcagagttgccgttggatcctcagctgtccaagatgttgattagc
agtccggattacaactgttctgaggagattgtgagtatcgtggcagccatgtcggtgcct
cagatctttatgcgaccgagagaagctgccaaggcggcagatgaagccaaggctcagttt
gtggatgcgacgagtgatcacattacattgttgaatgcctatgctgcctacgaggaagtg
cccgtggcagagaggaagcagtggtgttgggacaactttattaacgaccgttccatttcc
agtgcggagagtgtcaagaaacaattgagagggatcatgactcggttggacattcctctc
ttgacatgcagaggcaagaatggaaattacgataccaatgcaatccgcatgacgttgacg
actgcaatgtacatgcaagtagcgtacctccaacgtgctggcaactacctcactgtgaag
gataatcaaattgtgtacatccatcccggttcctctatcgatggaaagccgcaatgggta
ctgtttgaagaatttgcattgacttccaagaactacattaggacagtgacgactacgaag
ggagaatggctcgtggagatggcacctcactattttgacttggagaactttcccgagtgt
gaggcgaaggatgagcttgttttggaatacaagaagatggcgaggaggatgactagcaag
taa
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