Thalassiosira pseudonana: THAPSDRAFT_42365
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Entry
THAPSDRAFT_42365 CDS
T01078
Name
(RefSeq) chromosome condensation protein-like protein
KO
K06675
structural maintenance of chromosome 4
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_42365
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
THAPSDRAFT_42365
Condensin II
THAPSDRAFT_42365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
DUF3450
TMF_DNA_bd
Motif
Other DBs
NCBI-GeneID:
7450870
NCBI-ProteinID:
XP_002293913
JGI:
42365
UniProt:
B8CCA2
LinkDB
All DBs
Position
14:complement(354816..359327)
Genome browser
AA seq
1268 aa
AA seq
DB search
MITKMELENFKSYAGLKQIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKV
SELIHSSDAYTGDKELQYARVNVYFHEIVDTGEGDEEYEIVPGSELVVSRVARRDNSSQY
QMDGKNATFKKVAEYLGSKGIDLDNNRFLILQGEVEMISMMPPKGKNENDEGLLEYLEDI
IGSNKYVEQANAAAEKVEQLTEVRQEKLNRVKAAEKEKDGLAGAKAEAQALVGKDREIRR
KKNILHQIHGMFARKEGEAAREQRVELVEQLEGERLKLSEADERVREIESGMTEQQSDYD
RVFDELTTTKGEYTAWERQDIQMKENIKFEKSNIKKLEGKVVSEKKKMDDATEALEEAMK
SIPTLEERIEECTENKSEEDAKLEVIFEETKGITEQLRHELEEKTQELAPLLQERTIFQN
SLDTAQMEVNLLEDTVQRSTEQLVSAENELASLDSKQDGKKEELARCEVELREGKERVAV
AEEELKGLEGRESGLVKKSNELLTQVEIAKASMQSSSGRSRVATAILKASKKGGELEKCG
VMGRLGDLATIDGQYDVAISTACGMLDHIVVQTTAGTQKCLEFLRKHNLGRASFVPLDKM
KKGAHDRTVETPEGAPRLFDLITPANFHITPALFLAVGNTLVAPDLETATRWAYEFGKRW
RVVSMDGKLIETSGTMSGGGQSVQRGKMKLSTSPEDCKKLEDEAAKAQEEVKKCRVQRRE
LTDEIRSLNKKIKTLSVKLPQLQMEIAGFDTTREELTNRLPSLREQSTLSDADQQKKDEL
LKKVDKCKSEMASCVAATSKLEAEVSKLQKSIINAGGSKLKNQQKACDQAKKDLNDANKD
LNSAKSTITNSKKTIQKAEKVMGTAQTELESSKEALEQMQEEHKTRTSEAKDLLEAYEGV
KKVEAEKRKELEAVAKECEKLKQAQTKLKCAEVELSAKIENLDKQIKDSERKVAHYKKEI
DILCRVERQEENDYDFSDDEEEEDDDDKMDQEPDAKEEDDEEEDVDIEEVTSEKNLDAEA
KSIKNDISVLEKERDTLAKNANMGAIAEYRKKEADYLSRVSDLDQITNERNEARKAHDDL
RRLRLEKFMDGFSRITLKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKN
IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVAHYIKERTKNAQFI
IISLRNNMFELADRLVGIYKTNDCTKSITINPRLYSKEGKVSLPAEAAPQTPLLDRTNAN
VSTCPTPA
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgattacgaaaatggagctagaaaacttcaaatcctacgcaggcctcaaacaaataggc
cccttccacaaatgcttctcttccgtagtcggtcccaacggctctggcaaatccaacgtc
attgacgccatgctcttcgtattcggcaagcgcgcgaaaaaactccgtctcaacaaagtg
agcgaattgatccattccagtgatgcttatacgggtgacaaggaattgcaatatgctcgt
gtcaatgtgtactttcatgagattgtcgatacaggagaaggagatgaggagtatgagatt
gtgcccggatcggagttggtggtgtctcgcgtggcacggagggataattcgtcgcagtat
caaatggatggaaagaatgccacatttaaaaaggttgcggagtatcttgggagcaagggc
attgatttagataataatcggttcttgatcttgcagggagaggtggagatgattagtatg
atgcctcccaaggggaagaatgagaatgacgaggggttgttggaatacttggaggatatt
attgggagtaacaagtatgtcgagcaggccaatgccgctgccgagaaggtggagcagttg
acggaagtgaggcaagagaagttgaatcgcgtcaaggccgcagagaaggagaaggatgga
ttggcgggtgccaaggccgaggcacaggcattggtcgggaaggatagagagattcgcagg
aagaagaacatcttgcatcagattcatggaatgtttgcccgtaaagagggagaggcggcg
cgggaacaacgtgtcgagttggtggaacagttggagggggagaggctcaagttgtccgag
gcggatgaacgtgtgagggagattgagagtggaatgacggaacagcagtctgattatgat
agggtatttgatgaattgaccactacgaagggagagtacactgcgtgggagaggcaggat
attcaaatgaaggagaatatcaagtttgagaagagtaatatcaagaagttggaagggaag
gtggttagcgagaagaagaagatggacgacgccacagaggctttggaggaggccatgaag
agtattccaaccttggaggagcgcatagaagagtgcaccgaaaacaagtctgaggaggat
gccaagttggaagtcatctttgaagagaccaagggtatcaccgaacaactccgtcacgag
ttggaggagaagactcaagaacttgcccccctcctccaagaacgcaccatctttcaaaac
tcattggacacggctcaaatggaagtcaatctccttgaggatactgtccaacgttctact
gaacaacttgtcagtgcggagaatgagctagcttcattggatagcaagcaggatgggaag
aaggaggagttggctcggtgtgaggttgaattgagagagggaaaggagagggttgccgtg
gcggaggaagagttgaagggattggaggggagggagagtgggttggtcaagaagagtaat
gagcttttgacccaagtcgagattgcaaaggcatccatgcaatccagcagtggacgttcc
cgtgttgctactgccatcctcaaggcatccaagaagggaggcgagctcgaaaagtgtggt
gtcatgggacgtctcggcgaccttgccaccatcgatggtcagtacgacgttgccatctcc
actgcctgtggcatgctcgatcacattgtcgttcagaccacggcaggaactcaaaagtgt
ctcgagttcctccgaaagcacaacttgggaagggccagcttcgttcctctcgacaagatg
aagaagggtgctcacgatcgtactgtggagactcccgagggtgctcctcgtttgttcgac
ctcattactccagccaactttcacattactcctgcgttgttcttagctgtgggcaatact
ctcgtggctcctgatttggagacggctactcgttgggcgtatgagtttggcaagcgttgg
agggttgttagtatggacgggaagttgattgagacttcgggtaccatgtccggtggtgga
caatctgttcagaggggaaagatgaagttgtcgacgtcgccagaggactgcaagaaactt
gaggatgaagctgccaaggcacaagaggaggtcaagaagtgccgtgtccagcgtcgtgag
ttgactgacgagattcgttcgttgaacaagaagatcaagactctctcggtcaagcttcca
cagcttcaaatggagattgctggctttgacaccacgagagaggagcttacgaatcgtctt
ccttccttgcgagagcagagtactctttccgatgctgaccagcagaagaaagatgaactc
cttaagaaggtggataagtgcaagtcggagatggcttcctgcgtcgctgccacatccaag
ctcgaagccgaggtgtccaaattgcaaaagagtatcatcaatgctggaggctccaaactt
aagaatcagcagaaagcttgcgatcaggccaagaaggacctcaacgatgccaacaaggac
ctcaattctgccaagagtaccattacgaactccaaaaagacaatccaaaaggctgaaaag
gtcatgggcactgcccagaccgagttggagagtagtaaggaagcactagagcagatgcag
gaggagcacaagacgcgcacgagcgaggcaaaagacttgttggaagcctatgagggagtc
aagaaggtggaggccgagaagaggaaggagctcgaggctgtcgccaaggagtgcgaaaag
ctcaagcaggctcagacgaagctcaagtgtgctgaagtggagctttctgccaagattgag
aacctcgacaagcagatcaaggattcggagaggaaggttgctcattacaagaaggagatc
gacatattgtgcagggtggaacgtcaggaagagaacgattacgacttttcggacgatgaa
gaggaggaggacgatgatgataagatggaccaggagccagatgctaaggaggaggacgat
gaagaggaggacgtggacatcgaggaagtgacttctgaaaagaaccttgatgccgaggcg
aagtccattaagaatgatatttctgtgttggagaaggagagagacactcttgcaaagaat
gccaacatgggagccattgctgagtacagaaagaaggaggctgattatctctctcgtgtc
tctgacctcgaccaaatcaccaacgaacgcaacgaggcgaggaaagcacatgatgatctc
cgtagacttcgtcttgagaagttcatggacggtttctcccgtatcactctcaagttgaag
gaaatgtatcaaatgatcacccttgggggagatgcagagcttgagcttgttgattcgttg
gatcccttctccgagggtattgtcttctctgttcgtcctcccaagaagtcgtggaagaac
atcgccaatctttcgggtggagaaaagactctctcctcattggctcttgttttcgctctt
catcactacaagccaacgccactctacgtgatggacgagatcgatgcagcattggacttc
aagaacgtgtccatcgtcgctcattacatcaaggaacgtacgaagaatgctcagttcatc
attatttctctccgtaacaacatgtttgaacttgctgataggttggttggtatctacaag
acgaatgactgtaccaaaagcatcacaatcaaccccaggctctacagcaaggagggaaag
gtgtcacttccagccgaagctgctccgcaaacccctctcttggataggaccaacgctaac
gtcagtacttgccccactccagcataa
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