Thalassiosira pseudonana: THAPSDRAFT_42515
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Entry
THAPSDRAFT_42515 CDS
T01078
Name
(RefSeq) atp-dependent RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_42515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_42515
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_42515
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THAPSDRAFT_42515
Spliceosome [BR:
tps03041
]
Complex A
U1 snRNP components
U1 related factors
THAPSDRAFT_42515
Complex B
THAPSDRAFT_42515
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
Helicases
THAPSDRAFT_42515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
7449492
NCBI-ProteinID:
XP_002294093
JGI:
42515
UniProt:
B8CDF5
LinkDB
All DBs
Position
15:481251..484025
Genome browser
AA seq
471 aa
AA seq
DB search
MGGGSNFSNSNLGGTLHSIDFSSQQLIPFEKDFYIEHPDVSKRPETEAQAWRASKQIVIV
GEGIPKPCMTFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKT
LAFLLPAMIHINAQQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGV
PKSKQVRSLREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKI
VSQIRPDRQVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDK
YRNLLRYLRENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLRE
FKSCQATLLVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFV
TEKNGRMARDIIEILNRTQQNVPPELLNAVQTGGGRYGGGGGRGRGGGRRY
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggatccaacttctccaactcgaacctcgggggaacactccactccatcgac
ttttcctcgcagcagctcatccccttcgagaaggacttttacatcgagcaccctgacgtt
agtaaacgacctgagacggaggcacaggcttggagggcgagtaagcagattgtgattgtg
ggggagggaattcccaagccttgtatgacgtttgaggaggctagtatgcccgagtatgtg
ttgagcgaggtcatcaaatgcggctttgacaaaccaacccccatccaatcccaaggatgg
ccaatggcactcaaaggaaagaacatggtggggatttcggccaccggttcgggaaagact
ttggcgtttttgcttccggccatgattcatattaatgctcagcaatacctaaagcctggt
gaaggacccatcgtcctcgtccttgctcccacccgcgaactcgccgtccaaatcaaagag
gagtgcgataagtttggagcgtcctctgagatcaagaacactgtcgtctacggaggagtt
ccaaaaagtaagcaagtgaggtctctcagggagggagttgagattgtgattgccacacct
ggacgtttgattgatcatttggagcaggggaacacgaatctcaagcgcgtcacgtacttg
gttcttgatgaagccgatcgtatgcttgacatgggtttcgagcctcagctgcgcaagatt
gtctcgcagattcgccctgatcgtcaggttcttatgtggagtgctacttggccaaaggaa
gtccaaaatctcgcccgtgattacctcagcgacttctaccaagttaccgtgggatctctt
gatttggccggaaacaaagatgttacccaaatgattgatgtctgttccgatcaggacaag
tatcgcaacctcctccgttacctcagggagaatctcacttccaaggatcgtgtgttggtc
tttgtggagacgaagaaaggctgtgatatgcttactcgctctcttcgcatggatggcttc
caggcacgtgctatgcatggtgacaagagtcaggaggagcgtgattgggtgcttcgggaa
ttcaagagttgtcaggcaactcttcttgtggctactgatgttgccgctcgtggtctcgac
gtcgatgatatcaagatggtcgtgaacttcgatttccccaacgatacggagacctatatc
catcgtatcggacgtactggtcgtgcaggaaagaagggatttgccgtttccttctttgtt
accgagaagaatggacgcatggctcgtgacatcattgagattctcaataggactcagcag
aatgttccccctgaacttctcaatgctgtccagactggaggcggccgctatggtggcggt
ggtggacgtggccgtggggggggacgtcgctactag
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