Thalassiosira pseudonana: THAPSDRAFT_42624
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Entry
THAPSDRAFT_42624 CDS
T01078
Name
(RefSeq) predicted protein
KO
K05284
GPI mannosyltransferase 1 subunit M [EC:2.4.1.-]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00563
Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
tps01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
THAPSDRAFT_42624
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
tps01003
]
THAPSDRAFT_42624
Glycosyltransferases [BR:
tps01003
]
GPI-anchor biosynthesis
Core oligosaccharide
THAPSDRAFT_42624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mannosyl_trans
Motif
Other DBs
NCBI-GeneID:
7453118
NCBI-ProteinID:
XP_002294339
JGI:
42624
UniProt:
B8CDX6
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Position
17:<116350..119572
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AA seq
481 aa
AA seq
DB search
MTSTIQLLQSHPFLLGLALRLSLLFLLPLLLDDNPLLRGVRYTDIDYDVFTDAAFHVADG
RSPYERHTYRYTPFLASLLIGTLLSAKYFGKILFCVADAICGYIIVVLRKQRRRRISEED
DDERQYKQNNNNNVSGWRRLLDISPGLKDSLWWLYNPLPINICTRGSAESLVVLLPVLAT
SSWRLRRWGTTIPIIARACLAGIMHGVGIHAKLYPVIYTISFMAYFSHWNNNNNNNNEYK
LLLTMLPNELQTYQRRDGLILFLVFTVGTVGALTHAAVHFHGREALEEGLLYHFQRVDHR
HNYSMYWYWIYLARGRSYANANELSAVASPSSSIWGHLPLIPQVLILGFSSLGIAPYDLT
FALFCQTFAFVAFNKVMTAQYFTWYLCLLPLCSDRIKWNSRRMAFSLGLLAISIIAWLLS
AFSLEMLGWRSHRQVWLASLFFFVANVNLLTSILDGYKHEQIARAKTRPGEGWSKPKAKV
T
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcaccatccaactcctccaatcccatcccttcctcctaggcctcgctctccgt
ctatccctcctcttcctcctccctctcctcctagacgacaatcccctcctccgaggagtg
cgctacaccgacattgactacgatgtattcaccgatgccgcctttcatgttgcggatgga
aggagtccgtacgagaggcatacgtatcggtatactcccttcttggcgagtttattgatt
ggcacacttctttcggccaagtactttggcaagattttgttttgtgttgcggatgcaatc
tgtggatacattattgtcgtgctgcgcaaacaacgacgaagaaggatatcggaagaagac
gacgatgaacgacaatacaaacaaaacaacaacaacaacgtgagtggatggaggagatta
ctcgacatatcaccgggactcaaagattccctgtggtggttatacaaccccctcccaatc
aacatttgtacacgtggatcagcggaaagtttggtagtactgctcccagttctggccact
tcttcttggagactgaggaggtggggaacaactattccaataattgcacgagcgtgtctt
gcggggattatgcacggggttggtattcatgccaagttgtatccggtcatttatactata
tcgttcatggcttatttcagtcattggaacaacaacaacaacaacaacaacgagtacaaa
ctattactgacgatgctgccaaacgaactacaaacgtatcaaaggcgggatggactcatt
ttgtttctagtatttaccgtgggaaccgtcggagctctaacccacgcagctgttcacttc
catggtcgtgaggcattagaggaaggactactctatcactttcagcgagttgaccatcga
cacaactattcaatgtattggtattggatctatctcgcacgtggaagatcttacgcaaat
gccaacgaattgtcagcagtagcttctccttcgtcgtctatatggggacatcttcctctc
ataccgcaggtgttgatacttggcttttctagtttgggaatagcaccttacgatctgaca
ttcgctttgttttgtcagacatttgcgtttgtggcattcaacaaagtcatgacggcacaa
tactttacgtggtacctttgtttgttaccgttatgttcagatcgtatcaaatggaattct
agacggatggctttctctttggggttacttgccatatccatcatcgcatggctgctgtcg
gctttctcattggagatgctcggttggaggtctcatcgacaggtttggttagcgtcactc
ttcttcttcgtagccaatgtgaatctattgacttcaatcctggacggctacaagcatgag
cagattgcaagagctaaaacacgaccgggagaaggttggtcaaaaccgaaggcaaaggtg
acttga
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