Thalassiosira pseudonana: THAPSDRAFT_5078
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Entry
THAPSDRAFT_5078 CDS
T01078
Name
(RefSeq) histidyl-trna synthetase
KO
K01892
histidyl-tRNA synthetase [EC:
6.1.1.21
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
THAPSDRAFT_5078
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
tps01007
]
THAPSDRAFT_5078
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_5078
Enzymes [BR:
tps01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.21 histidine---tRNA ligase
THAPSDRAFT_5078
Amino acid related enzymes [BR:
tps01007
]
Aminoacyl-tRNA synthetase
Class II (A)
THAPSDRAFT_5078
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
THAPSDRAFT_5078
Prokaryotic type
THAPSDRAFT_5078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_His
HGTP_anticodon
tRNA-synt_2b
tRNA-synt_2d
Vac17
Motif
Other DBs
NCBI-GeneID:
7451725
NCBI-ProteinID:
XP_002290086
JGI:
5078
UniProt:
B8C1W7
LinkDB
All DBs
Position
5:314203..315837
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AA seq
508 aa
AA seq
DB search
MCASLLQRRAITAVAFQLSSTSTIRIPTLSSRSIVTSSTSLYVEGGVGGRVAASVTDKDL
LSKTTTDNNTNSSPPKVALDTNPPKGTRDFYPPDMRLRTWLFSQWRIVASLYGFSEYDAP
VLESESLYTRKAGEEVTQQLYNFVDKGDRNVALRPEMTPSLARMVMAKKGGLPLPLKWFS
IPQCWRYERMTRGRRREHYQWNMDIWGVDGIEAEAELLSAMVMFFKRVGLTSEDVGIKVN
SRGVIGEVLKELGVPEEKFAATCVLVDKLEKVPLDAIQGELEELGLEKSTIEKLTSVLTN
TSIESISAVLPPGSDAVKQLSQLFKLCEAYGIADWILFDASVVRGLAYYTGIVFEAFDRK
GVLRAIAGGGRYDKLLETFGGEPTPAAGFGFGDAVIVELLKERDVLPSFEGSGFDTVVFA
MSEDLFGVAVQVASTLRQNGQSVDLILENKKPKWVFKHASRNEAKYCVIVAGDEYKNGEV
SVKDLALGEQMSVKIDALDSWAKEVAER
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcatctcttctccagcgacgagccatcaccgctgttgcatttcaactgtcatcc
acctctactattagaataccaacactctcctctcgatctatcgttacatcatctacatct
ctctacgttgaaggcggtgtaggaggaagagtagctgcctcagtcacagacaaagatctc
ctctccaaaacaacaaccgataataacaccaactcatcaccacccaaagtagcacttgac
accaacccacccaaaggaacacgcgacttctaccctcccgacatgcgtctacgaacctgg
ctcttctcccaatggcgcatcgtcgcttctctctacggcttctccgaatacgatgcaccc
gtccttgaatcggaatcgctgtacactcgcaaggccggagaggaggtcacgcaacaattg
tacaactttgtggataagggtgataggaatgtggcgctgaggcccgagatgacacctagt
ttggctaggatggtcatggcgaagaaaggagggttgccgttgccgttgaaatggttttct
attcctcaatgttggaggtatgaacgtatgacgagggggagacgtcgtgagcattaccaa
tggaatatggatatttggggcgtggatggtattgaagccgaggcagagttgttgagtgcc
atggtcatgttctttaagagagtgggattgactagtgaggatgtaggtattaaggtgaat
tcaaggggggttattggggaggtgttgaaggagttgggtgtaccggaggaaaagtttgct
gctacgtgtgtattggtggataagcttgagaaggtaccactcgacgccatccaaggggag
ttggaagaactcggcttggagaagtccactattgaaaagcttacctccgtccttacaaac
acatccattgaatccattagtgccgtacttccacccggttcagacgccgtcaaacaactc
tctcaactgttcaaactgtgtgaagcatatggaattgctgattggattctctttgatgca
tcggtagttcgtggacttgcctactacactggcattgtgtttgaagcatttgatagaaaa
ggagtacttcgtgccattgctggaggaggaagatacgacaaactgcttgagacatttggt
ggagaaccaactccagctgctggtttcggatttggagatgctgtcatcgtagagttgttg
aaagaacgcgacgttttaccatcctttgaaggaagtggattcgacaccgtggtatttgca
atgagcgaagacttgttcggagttgccgtgcaagtggcatcgacattgcgtcagaatgga
cagtcggtagatcttatattggagaacaagaagccaaagtgggtattcaaacatgcaagt
aggaacgaagcgaaatactgcgttatcgtcgctggcgatgagtacaagaatggtgaggta
tcggtgaaggatttggctctaggggaacaaatgtcagtcaagatagatgccttggatagt
tgggctaaggaagttgcagagaggtga
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