Thalassiosira pseudonana: THAPSDRAFT_5079
Help
Entry
THAPSDRAFT_5079 CDS
T01078
Name
(RefSeq) predicted protein
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_5079
Enzymes [BR:
tps01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
THAPSDRAFT_5079
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
THAPSDRAFT_5079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-U11-48K
Methyltransf_32
zf-TRM13_CCCH
Methyltransf_16
Motif
Other DBs
NCBI-GeneID:
7449659
NCBI-ProteinID:
XP_002290538
JGI:
5079
UniProt:
B8C1W8
LinkDB
All DBs
Position
5:complement(315960..317738)
Genome browser
AA seq
592 aa
AA seq
DB search
MEGDEVNTKPTPPENWDRCHAYNERKRRYCRQAPVPSNDVSSAHQPRYCGNHMHLLDKLI
SSGNTGSQADDTMNKLKRPREYEPSNVTANTNKKDRGKRIPCPIDPSHLIFESALSKHIK
VCPAAKQKQDVATNEYYREGVNVGGFGELSVGDGRMSASTTDDVQRANELALAVLRVFRH
LFMNTDEVKGEEISTEQLKQLTRDDIYNALPEVDLSSIEESTGTNTTDSNSTANDEPQQA
GRLTSAITKYRIKAGGSRHLHQIASILGHLRQKGLIDRENTQPQRTVLEMGAGRGMLGLV
VAGAMGASIKSELESKVKLCLVERTGSRAKAETKIRTAIKDAQRKENTTSKPDNSTTDEC
LRLDLVEVTRIKCDLAHIHLPTAFPFLTANQTQSDPTSNAVVIAKHLCGAGTDLALKSLR
DIAPTGSVNGCVMATCCHGLCTWEDYVGRHCLLELFCESVGRLSNFDETDFNILKRWTSA
SVLEDTSRNNTEVGDTTDEAKEEHHSNVVEEKGSATHIFEVVSRLGLLCGGSGLGRVCQR
VIDYGRCDYIKRQLFSSSRGNGSTSNDDTVSLLHYVQSGITPQNALILATKR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagggagacgaagtcaacaccaagcctacgccgccagagaattgggataggtgccat
gcttataacgaacgaaagcgacggtactgtcggcaggcaccggtaccttccaacgatgtg
tcatctgcccatcaacctcgctattgtggcaaccacatgcatctccttgacaagttgata
tcttctggtaacaccggaagccaagccgacgacacgatgaataagctcaaacgaccacgc
gaatatgaaccatcaaacgtaaccgccaataccaacaagaaagacagagggaaacgtatc
ccctgcccgattgatccatctcacttgatctttgaatctgctctatctaaacacatcaag
gtatgtccagctgcaaaacagaaacaagatgttgcgacaaacgagtactaccgcgaggga
gtcaatgtcggagggtttggtgagctgagcgtgggtgatgggagaatgtccgcatctaca
acagatgatgtgcaaagggcaaacgagttggcattggctgtacttcgggtgttccgtcat
ctcttcatgaatacggacgaggtaaaaggggaagaaatcagtaccgaacaactcaaacaa
ctgacacgagatgacatttacaatgctctcccggaagtggacctgtccagtattgaagaa
agcacgggtacgaataccactgattccaactcaacagcaaatgacgaaccacaacaagct
ggaaggctgacatctgcaattacaaagtacagaatcaaagccggagggtcacgtcatctc
catcagattgcaagtattttaggtcatctacgccaaaagggtttgatagacagagagaat
acccaaccacaacgtactgtactagagatgggagctgggagaggaatgctaggcctcgtt
gttgcgggagcaatgggtgcatctatcaaatcagagttggaatcaaaagtgaaattatgt
cttgttgaaagaacaggtagtcgtgccaaggccgagacaaagataagaactgctatcaag
gatgcccaaagaaaggagaatactacgtcaaagccagacaattccacaacagatgaatgc
cttcgtttggatctcgtagaagtgacgagaatcaagtgtgatttggcacacatccatcta
ccaacagctttcccctttctcactgcaaaccaaactcagtctgatcctacttcaaacgca
gttgtcattgcgaagcatctatgtggagctgggacagatcttgctttgaagtctcttcgc
gatattgctcctactggatcagttaatggctgcgtgatggctacgtgctgtcatggcttg
tgcacatgggaggattacgttggaagacactgtctgctggagttgttctgtgagtctgtc
ggcaggttatccaattttgacgagacggattttaacatcttgaaacgttggacctctgct
tctgtactggaggatacatctcgcaacaataccgaagtcggggatacaactgatgaagca
aaggaagagcatcactccaatgttgtggaagagaaaggaagtgctacccacatatttgaa
gtcgtgagcagattaggattgttgtgtggaggcagtggcttgggacgggtatgccaaagg
gttatagactatggaagatgcgactacatcaagcgtcagctcttttcttcaagcaggggc
aatggctcaacctcgaacgacgacactgtgagtttgctccactacgttcaaagcggcatc
accccacaaaacgcactcatacttgcaacaaagagatga
DBGET
integrated database retrieval system
