Thalassiosira pseudonana: THAPSDRAFT_5353
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Entry
THAPSDRAFT_5353 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13176
THO complex subunit 7
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_5353
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_5353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_5353
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_5353
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
THAPSDRAFT_5353
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
THAPSDRAFT_5353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC7
Relaxase_C
KIF21A_4th
Uso1_p115_C
DAHP_snth_FXD
Csa3_N
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
7442790
NCBI-ProteinID:
XP_002290670
JGI:
5353
UniProt:
B8C2P3
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All DBs
Position
5:complement(<978034..>978795)
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AA seq
253 aa
AA seq
DB search
MTTAAAPSSPATAAAPATETPLPPPTFDNETQRERIIIQGGLGGGALTKVASKFRDLVHS
LATDGATANVPNEKSPTAIATALQTELLLHDLEIRKLLLSARASDTTSTQYDHLLTQLQS
AIASTREEITSLTSTLEEERTIQQHRQEYNSLAALCNSNKTPPIRTSQLELQRVHEEIER
VEKEVEGAQWELNVREKQMRTLMACLGDLKSVLREENFRKGSGIGNAEEDGSEEGRGEDG
GEGEQGKKRKRVA
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgccgccgccccgtcgtcccctgccactgcggctgcaccagccacagagaca
cctctgcctccgccaacctttgacaatgaaacacaaagagaacgcataataatccaagga
ggcctcggcggaggagcccttacaaaagtggcatccaaatttcgtgacctcgtgcactct
cttgccaccgatggtgcaacagcaaatgtgccgaatgaaaagagccccaccgccatcgca
accgctctacaaacagaactgcttctccacgatctcgaaatacgcaagctcctactatca
gcacgagcgtccgacaccacctccactcaatacgatcacttactcactcaactgcaatcc
gccatcgcatccactcgagaagaaataacaagtcttacttccacattggaggaagaacgg
accattcaacaacatcgacaggagtacaattcactagcggcactgtgtaattctaacaag
acaccgcctatacgaacatcacaattggagttacaacgtgtccacgaggagattgaacgg
gttgaaaaagaggtggagggtgcacagtgggaattgaatgtgagggagaagcaaatgagg
acactgatggcttgtttgggtgatttgaagagtgttttgagggaggagaactttcggaag
ggaagtggtattggaaatgctgaggaggatggaagcgaggagggtaggggggaagatggt
ggagagggagaacagggaaagaaaagaaagagagttgcataa
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