KEGG   Thalassiosira pseudonana: THAPSDRAFT_5353
Entry
THAPSDRAFT_5353   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K13176  THO complex subunit 7
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_5353
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_5353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_5353
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_5353
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     THAPSDRAFT_5353
Spliceosome [BR:tps03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    THAPSDRAFT_5353
SSDB
Motif
Pfam: THOC7 Relaxase_C KIF21A_4th Uso1_p115_C DAHP_snth_FXD Csa3_N Exonuc_VII_L
Other DBs
NCBI-GeneID: 7442790
NCBI-ProteinID: XP_002290670
JGI: 5353
UniProt: B8C2P3
LinkDB
Position
5:complement(<978034..>978795)
AA seq 253 aa
MTTAAAPSSPATAAAPATETPLPPPTFDNETQRERIIIQGGLGGGALTKVASKFRDLVHS
LATDGATANVPNEKSPTAIATALQTELLLHDLEIRKLLLSARASDTTSTQYDHLLTQLQS
AIASTREEITSLTSTLEEERTIQQHRQEYNSLAALCNSNKTPPIRTSQLELQRVHEEIER
VEKEVEGAQWELNVREKQMRTLMACLGDLKSVLREENFRKGSGIGNAEEDGSEEGRGEDG
GEGEQGKKRKRVA
NT seq 762 nt   +upstreamnt  +downstreamnt
atgacgaccgccgccgccccgtcgtcccctgccactgcggctgcaccagccacagagaca
cctctgcctccgccaacctttgacaatgaaacacaaagagaacgcataataatccaagga
ggcctcggcggaggagcccttacaaaagtggcatccaaatttcgtgacctcgtgcactct
cttgccaccgatggtgcaacagcaaatgtgccgaatgaaaagagccccaccgccatcgca
accgctctacaaacagaactgcttctccacgatctcgaaatacgcaagctcctactatca
gcacgagcgtccgacaccacctccactcaatacgatcacttactcactcaactgcaatcc
gccatcgcatccactcgagaagaaataacaagtcttacttccacattggaggaagaacgg
accattcaacaacatcgacaggagtacaattcactagcggcactgtgtaattctaacaag
acaccgcctatacgaacatcacaattggagttacaacgtgtccacgaggagattgaacgg
gttgaaaaagaggtggagggtgcacagtgggaattgaatgtgagggagaagcaaatgagg
acactgatggcttgtttgggtgatttgaagagtgttttgagggaggagaactttcggaag
ggaagtggtattggaaatgctgaggaggatggaagcgaggagggtaggggggaagatggt
ggagagggagaacagggaaagaaaagaaagagagttgcataa

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