Thalassiosira pseudonana: THAPSDRAFT_5916
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Entry
THAPSDRAFT_5916 CDS
T01078
Name
(RefSeq) predicted protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03440
Homologous recombination
tps03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THAPSDRAFT_5916
03460 Fanconi anemia pathway
THAPSDRAFT_5916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_5916
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
THAPSDRAFT_5916
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
THAPSDRAFT_5916
FA (Fanconi anemia) pathway
Downstream FA components
THAPSDRAFT_5916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
zf-C3HC4_3
PDZ
Prok-RING_4
DEAD
PDZ_6
PDZ_2
ResIII
Motif
Other DBs
NCBI-GeneID:
7448388
NCBI-ProteinID:
XP_002290931
JGI:
5916
UniProt:
B8C513
LinkDB
All DBs
Position
6:248074..253951
Genome browser
AA seq
1848 aa
AA seq
DB search
MATTRHGVSKPNSATNSNNGINEENHGNTGGVVGSPSHRKRGAAKPPSSNDDGTNVGGSG
GPDIAVDDTNDENFADNSNSSNFTGSTSSGGNDDGSRVDETPSKRARRSSSLFSQFQSAS
STAAVAEQENNSINDSNSNDGVQLKVEPHAINTANDDDDNNNNNDGDSDIEVLSPTRFKD
ASMNYGGPAVSRGGAAGNENTTEEDEDEIQVTASNTTNPNIDYPHMRHSCGVFPFRTSNS
NGAHGESSSNTDTNDQHCQKCYCYICDTPSSECEYWSQSKIASTKEKVALGTLDSGLFDK
LSEMGGHCDAFVDKGGVISDGGNSYHGGRRNNSNAGGWDALREFVMKRKNPNATTQREEH
GEVTVLNTPRNPYQGNNNSNPPTNPYQNQMAQIQNLIHNEFMATNEEENNTTAEANEKAL
VEEEQLQRARGGGGSAAAASSSSSIATATTATSTYDSNNSNKIQRKKMEGDIPNLSLYNS
FFVEGIKIGWPFPQVMKPQRQMAIHLIKALKNSKHVVLESPTGTGKSAAILCSVLAWQRF
HYKQMLKERRDERSSTAADVAERNEGAASEPKKVTIVYCSRTHSQVAQMVASLKSTPYRP
RMAILGSRERLCIHKSIKPRGKNAEAVSGINVNNECRVRVRNTEKSRKHKLSNPDSRDPY
LDDDPPESMPGDGNTYNPVEEGVEEETEENRFIGRSKTCSHYRQLTTNRVANLAHSTFVP
NNKVDCCSAGGKKSTYGAHDIEDLVNFGVDPYLQKEVALYRGKGVKTFGLSLIKQSGSNS
CVIQSTKKDYPADVNGSLKSGDRILRVNGNDVSQSSPTSVAGMIRDVTADPLLLDVTRGG
SGTLSQGDGSYSSHAACPYYISHILAKDAEIIFAPYNYVLDPSIRDAMGLDLTGSVVILD
EAHNVEDTLRSAGSGEFGEFALCELIVMLNNYAITEKSTTNMMEVGGIAPPSGDSTETAY
LCDVAHVLLLFVEKIANKLRAAKQSFERNPGAKGADAVLRESEKFHSPDDTEYEVTFDGP
SGNGLRGKPVGCLPFFEQLGLTSDDFEMLARYVEAFEKFFRGHEPNEASGERDRISNLVD
SLIDLVHKMYAALKTPEHYYAAVMCKANGSLEHARCGVVDESEGNGGRSKRKPKLLPLIP
PRTANHPNRPPNPCLHACCKAQCINILDPIRHGNGCDGSTPKWEATLHLNLLTPGPLMQQ
LSNECRTLVLASGSLSPLPSLCAELNLFPADASIGVSSPKPTSTQDILQPTVQKRLQNRP
PPLEADHVVDLDKQLFAVSIGAFADGSELRVAQKNYSQNSFIEKLGDTIVNIISGIPKGG
VLIFLPSYSLLRRCERLWNPNGYRNNRRSFWSQQEESDGPSVFDRLKQLKHNVIVEPTGG
QDEFEAKKDEYMESVKHFGGCVLFAVFRGKMSEGISFNDNNARGVICVGLPLPSAFSLPI
QVKMKYNDEQRKLRHRTDLLPGREWYQQQAYRAIAQALGRCIRHAADYGAIFLLDSRHCD
DGSPNDGIPNAHKNLPKWMRRSVKNLSMNTSGRASMLNYVSSSKTVMGGYPGLRQELRRF
FMAAKPHVASVIQKQHKLIADAQEKSAVFTFDSRANTWSEAKSPPPTVATKSPSQYSRSN
SSIDAKLKTASLSSAAKSNESSSDDEDIVVIVKPSSKQGIQIVTSKQNTLKDAFKKQQTL
APAAATSGSGKPSSIRTSSSKSARAPSNLKNMFEKQRAASASTQGEVSTQADVEPTHSPL
VRSTQPVRTDDANTHCFVKSPFVQETFSPIAGAAVASSAPLQQVDIGSQASAMESDEHLC
VVCEDAKKEVIILPCKHMCLCKKCANFDIMKLCPLCRSPVQDSLDVYW
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacacggcacggcgtctccaaacccaacagcgccaccaacagcaataacggc
attaatgaagagaaccatggtaacactggtggtgttgtaggctctccgtcgcatcgcaag
cgtggcgctgccaaaccgccgtcgtccaatgatgatgggacaaacgttggtggttcagga
ggtccggatattgccgtggatgatacaaacgatgaaaatttcgcagacaatagtaactcc
agcaattttactgggtctacaagcagtggtggcaatgatgatggcagtagagttgacgaa
actccgtcaaaacgagcgagacgaagtagttcgctgttttcccagttccagtctgcttcc
tccactgccgctgttgccgaacaagagaacaacagcatcaacgacagcaacagcaatgat
ggagttcagttgaaggtagaacctcacgcaatcaacacggccaacgacgacgacgacaac
aacaacaacaacgatggggattcagatattgaagtactatcgccaactcgcttcaaggat
gccagtatgaattatgggggaccagcagtgagtagaggtggtgcagcggggaacgaaaac
acaacagaggaggacgaagatgaaattcaagtgactgcgtccaatacgaccaatccaaac
attgactatcctcacatgaggcatagttgtggggtgtttccgtttcgcacctccaatagc
aacggtgctcatggagaaagtagcagcaacactgacaccaatgatcagcactgtcaaaaa
tgctactgctacatttgtgacactccctcctctgagtgtgaatactggtctcagtccaag
attgcaagcaccaaagaaaaggtggcattgggtacgttggattcgggattgtttgataag
ttgagtgaaatgggtgggcattgtgatgcgtttgttgacaagggtggtgttattagtgat
ggaggcaacagctatcacgggggaaggagaaacaacagtaatgcaggggggtgggatgcc
cttcgtgaattcgttatgaagcgaaagaatccaaatgcaacaacacaaagagaagagcat
ggagaagtgactgtattgaatactcccaggaatccataccaaggcaacaacaatagcaac
cctccaaccaacccataccaaaatcaaatggctcaaatccaaaacctaatacacaacgag
ttcatggccacaaacgaagaagagaacaacaccacggccgaggcaaatgagaaggctttg
gtggaagaggagcagttgcaacgagcgagaggtggtggggggagtgctgctgctgcgagt
agtagtagttccattgccacggcaacaacggcaacaagcacatatgattccaacaactcg
aacaaaatacagagaaagaagatggaaggtgacattccaaatctatcactctacaactcc
ttctttgtcgaggggatcaagatcggttggccgtttccacaagtgatgaaaccgcaaagg
caaatggccattcatcttatcaaagcattgaaaaatagcaagcatgtcgtgttggagagt
cctactggtacgggaaagagtgcagcaatcttgtgttcagtgttggcgtggcaaagattt
cattacaagcaaatgttgaaggagaggagggacgagcgtagtagcactgctgctgatgtg
gcggagaggaatgaaggggcggcttctgaaccaaagaaggttactattgtctattgcagt
cggactcattcccaggtggctcaaatggtggcatctctcaaaagcacaccttaccgacca
cgaatggcgatcctcggtagcagagaacgattgtgcatccacaaaagcattaaaccacgc
ggtaaaaacgccgaggcagtatctggaatcaatgtcaacaatgaatgtcgagttcgtgtt
cgcaatactgagaaatctcgcaagcacaagctttccaaccctgattctcgtgatccatac
ctcgacgatgatccacctgagtctatgcccggagatggaaatacatataatccagtagag
gagggggtggaagaagaaactgaggagaatcgtttcattggaagatccaagacgtgttct
cattatcgtcagcttactaccaaccgtgttgccaatttggctcattcaacgtttgttccg
aacaacaaagtagactgctgctctgctggaggaaagaagtcaacgtacggtgcacatgat
atcgaagatctcgttaactttggtgttgatccgtatctccaaaaggaagttgccttgtat
cgcggaaagggagttaagacatttggtctatcactgatcaaacaaagtggtagtaatagc
tgcgtcatccaaagcacaaagaaggattatccagcagacgtgaatggatcgctcaagtct
ggagatagaatccttcgagtcaacggcaatgacgtttcgcaaagctctccgaccagtgta
gcagggatgatcagagatgttactgcagatccgttactgttggatgtcactcgaggaggg
tcggggactttgtcgcagggtgatggcagctactcatctcatgctgcatgtccgtactac
atctctcatattcttgcaaaggacgctgagattatctttgctccgtacaactatgtactg
gatccgtcaatccgggatgcgatgggcctcgatctgactggatccgtggttatcctcgat
gaggctcacaatgtagaggacaccttgcgatcagcaggcagcggagagtttggcgagttc
gctctttgcgaactgatcgtaatgctcaacaactacgctattactgagaagtcaactacc
aatatgatggaagtcggcggcattgctcctccttctggcgattccactgaaacagcttac
ttgtgtgatgtagcacacgtccttctcctcttcgttgaaaagattgcgaacaagctaagg
gcagcgaaacagtcgtttgagcggaatcctggagccaaaggtgctgatgcagtattgaga
gagtcagagaagttccattcaccagatgacactgagtatgaagtaacatttgatggtcct
agtggcaatggcctcagaggcaaaccagttggatgcttaccattctttgagcagcttgga
ttgacctctgacgactttgaaatgctcgcccgatatgttgaggcgtttgagaagttcttc
cgcggtcatgaacctaacgaagcgtctggtgagagagatcgtatttccaacctggtcgac
agcctcattgatctcgtacacaagatgtatgctgcactcaagactccagagcattactac
gctgctgtcatgtgcaaggcaaatggatctctcgagcatgcaaggtgtggagttgtggat
gagagcgaaggaaacggaggaagatcaaaacgcaagcccaaactactacctctcattcca
ccgagaacggcaaaccatcctaaccgccctcctaatccttgtcttcacgcttgctgtaag
gcacaatgcatcaatatcttggatcccattcggcatgggaatggctgcgacggctcgacg
ccaaaatgggaagcgactcttcatctgaatctactaacgcctgggcccttgatgcaacaa
ctctcaaatgaatgccggactcttgtgcttgcaagtggcagtctctcgccgttacccagc
ctttgtgctgagctgaatctgtttcccgccgatgcctctattggtgtttcttctccgaag
ccaacatcaactcaagacatcttgcagccaacggtacaaaagcgtcttcaaaaccgtcct
ccaccattggaggctgatcacgtggtagacctcgacaagcaactctttgcagttagtatt
ggtgcctttgctgatggctctgagttgagagttgctcaaaagaactactcccaaaacagc
ttcattgagaagcttggcgatacgattgtgaacatcattagtggcatcccaaagggaggg
gttctcatatttctgccttcgtactcattgctccgacgatgcgagcgattgtggaatcct
aatggttacagaaacaatagacgatccttttggagtcaacaagaagaatctgatggtccg
tcagtgtttgatcgactgaaacaactgaaacacaatgtgatcgtggagccaactggtggt
caagacgagtttgaagctaagaaagacgagtacatggaaagtgtaaagcattttggtgga
tgtgttttgtttgcagtatttcgtggaaagatgagtgaagggatatcattcaatgataac
aatgcaagaggcgtgatatgcgtaggtttaccgctgccaagtgcgttcagtctgcctatc
caagtgaagatgaaatacaacgacgaacagcggaagctaaggcatcgtactgacttgtta
ccgggtagagaatggtaccagcagcaagcttacagggcaattgcacaagctcttggtcgt
tgtatcaggcatgctgcagattacggtgctatcttcttgttggattcgcgtcattgtgat
gatggaagtcctaacgacggtattcctaatgctcacaagaacctccctaaatggatgagg
cgatcagtgaagaatctctccatgaacacatcgggacgagcttccatgctcaactacgtt
tcgtcgtcaaagaccgtcatgggaggttatcctggattgaggcaagagcttcggcgtttc
ttcatggctgccaaacctcacgttgcatcggtcatccaaaagcaacacaagttgattgca
gatgcacaagagaagtcggctgtcttcacttttgactcgagagcgaacacgtggagcgag
gcaaagtccccgccaccaacagtcgctaccaaatctccgagtcaatatagcagatcaaat
tcatcaatcgacgctaagttgaaaacggcaagcctctcttcagctgccaaaagcaatgag
tcttcatcggacgacgaagacattgttgtgattgtgaagccttcttccaaacagggcatc
caaatcgtcactagtaagcagaacacgttgaaagatgcattcaagaagcagcaaacattg
gcaccagctgcagctactagtggatcaggaaagccgtcttccatcagaacatcctcgtca
aagtctgcaagagcaccctccaatttaaagaatatgtttgagaagcaacgtgctgcctct
gcaagcactcaaggagaggtgtctacacaagcggatgtagaacctactcacagtcctctt
gtccggagtactcaacccgttcgtactgacgatgccaatactcactgcttcgttaagtct
cctttcgttcaagaaaccttttcgccaattgccggtgcagcagtggcatcatcagcacca
ctgcaacaagttgacattggaagccaagctagtgcaatggaatcggatgaacatctctgt
gttgtctgcgaggatgcaaaaaaggaagtcatcattctgccttgcaagcacatgtgtctt
tgcaagaagtgtgcgaactttgacatcatgaaactttgcccactgtgtcgttctcccgtt
caagattctttggacgtgtattggtga
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integrated database retrieval system
