Thalassiosira pseudonana: THAPSDRAFT_6052
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Entry
THAPSDRAFT_6052 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_6052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_6052
Spliceosome [BR:
tps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
THAPSDRAFT_6052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
7448582
NCBI-ProteinID:
XP_002290999
JGI:
6052
UniProt:
B8C5F2
LinkDB
All DBs
Position
6:587015..588842
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AA seq
502 aa
AA seq
DB search
MADNLLDDLDDLSDVEPEELTNNDDIGGDDLSNDGEDDTFNGNGIDDGADGARTTASRRP
RLLDDPSLKSHLSSIRSAQDADTNTKMSATSSKDEDHHEHTLILSSNKHLVSLGHEIHRT
HLELCRLYNTKFPELEELLTDPYQYRAAIGIIQNEMDVTMVNDQLNEILTSNQIITISVA
GSTTSGRALTGEELEKVNGACVYLDELRSTQEELTRFVESRMERWAPSVCALVGSSLAAQ
LLASTGGLAELSKIPACNLQLLGRIRSTASSRGGMATQTRTQHAGYLMECDLVQACPNYL
KMKAVKAVAGKLALVARSDFVNCEAGRKRTADVGRKFHEELKQKFSKWEEPDKAQVVKAL
PKPDLTTKKRRGGKRIRRMKERFEETELMKQANKRAFSVESGEYGDDAMGLTLGMLSTKE
GGAMRNTVEKKKMRQANTKASRKRAIQMSSGATNGLASSMVFTPVQGLELVNPDANKERV
RAANAKWFQSNAGFQSALPKKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaccttctcgacgacctcgacgacctttccgatgtggagcctgaagagttg
accaataacgacgacatcggcggtgacgatctctccaacgatggagaagacgatactttc
aacggcaatggtatcgacgacggagctgacggtgcacgtactactgccagccgccgccca
cgtctcctcgacgatccctccctcaaatcccacctctcttcgatacgctccgcacaagat
gcagacaccaacaccaaaatgagcgccacctcctccaaagacgaagaccatcacgaacac
actctcatcctctcgtcgaacaaacatctcgtatcactcggacatgaaatccaccgcacc
cacttggagctatgtcgtctctacaacaccaaattcccagagttggaagaactactcacc
gatccgtatcagtatcgtgctgctattggtattatccagaatgaaatggatgtcaccatg
gtgaatgatcaactgaatgagatattgacgagcaatcaaattattacgattagtgtggct
ggatcgactacgtcgggcagggcattgacgggggaggaattggagaaggtgaatggcgcg
tgtgtgtatttggatgagttgaggagtactcaggaggagttgacgaggtttgtggagagt
aggatggagaggtgggctccttcggtttgtgccttggtggggagttcgcttgctgctcaa
ttgttggctagcacgggtggattggctgagttgtccaagattccggcgtgcaatcttcaa
ttgttggggaggatccgatccacggcttcgtcacgaggaggtatggcgacgcagactcga
acacagcatgcaggatatctaatggagtgtgatctcgtccaagcatgtcccaactatctc
aaaatgaaagcagtcaaggcagtggcaggaaagttggcgttagtggcacgatcggacttt
gtcaattgtgaggctggaaggaagaggactgccgatgtggggagaaagtttcacgaggag
ctgaagcaaaagtttagtaaatgggaggagcctgacaaggctcaggtggtcaaggcattg
ccaaaacctgacttgacaacaaagaagcgacgcggaggcaaacgcatccgtcgtatgaaa
gaacgcttcgaggaaactgaattaatgaaacaagctaacaaacgtgcattctcggtggag
tctggtgagtacggtgatgatgcaatggggctcactctcggtatgctgtcaacgaaagaa
gggggtgcaatgcgaaataccgtggagaagaaaaagatgagacaagccaacacgaaggcc
agtagaaagcgagcaatccaaatgagttcaggtgcaacaaacgggttagctagtagcatg
gtgtttactcctgtacagggattggagttggtgaacccagatgccaataaagaacgagtt
cgtgcggccaacgccaagtggtttcagtcaaacgccgggtttcagtcagctctcccaaaa
aaggggtga
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