Thalassiosira pseudonana: THAPSDRAFT_6178
Help
Entry
THAPSDRAFT_6178 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10632
BRCA1-associated protein [EC:
2.3.2.27
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tps04121
]
THAPSDRAFT_6178
Enzymes [BR:
tps01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
THAPSDRAFT_6178
Ubiquitin system [BR:
tps04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
THAPSDRAFT_6178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-UBP
zf-rbx1
zf-C3HC4
zf-RING_2
BRAP2
zf-C3HC4_2
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-RING_11
zf_RING_Vps8_fungal
Seryl_tRNA_N
Uds1
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
7445937
NCBI-ProteinID:
XP_002291449
JGI:
6178
UniProt:
B8C5S8
LinkDB
All DBs
Position
6:complement(905916..908086)
Genome browser
AA seq
679 aa
AA seq
DB search
MSEARDSPAATRVEPSIAADDSHLKLDYRLRRWLVRFGNPALGTYGGGIVTLHPRSSRRR
RLLMGDYVEEGSNEGVDDSDDDDGISSDESSCDSYSSCSSCEAATQSNNDKTKHTTQQRM
ERIAIMTNVPPHQVPDGVLNLVRGHRPFIEHVRIVIGSSRSEEADKRRERRKRRQLAIVA
QREQQSKGELVRRRSQTWTCENEEEAGSKSLGASMSAVSIGGTFDNQSSMTSSEHLTRDS
RSSSLDVLTPLYQKGPAVDTSGFGEEKSEFGDKDEDDEEKKYHLLFVLDSEASAESFVSD
LHHRPFTTLDESETCSVYHALHVEGEAGVNLLGPFFASSTTSSNHQSTTIAEDTSAEHQC
PVCLEKMTLPSVTSTSDSAAASSSILTTVCNHSFHIDCLARWQDSPCPVCRYDHSGLNDT
LSQCHVCSTTVRNYVCLICGVISCATGPSSSSHNAAVETDNPLAAQPSQRGHALRHYEES
LHAYALDTETQHVWDFAGGGYVHRLIQNAEDGKIVEGADPRLVDEERFLHQNDDEDDEAV
HRKLEGYAGQYYTLLKSQLEQQRIFYEGKLESIRREYGHESSGRESQSTSDLISALKQER
NQLEQRCSTLRRKHRKVNDDVMFLKDMNESLENDKVAFRKQIGEAQAELATAKKMTQQML
SPMEGKVHELMLQLTGDDS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggcgcgtgattcacctgcagccaccagagtggagccgtcgatcgccgcagat
gattcacatctgaaactcgactatcgtctgcggcgatggcttgttaggttcggcaacccg
gctttaggaacgtatggcggtggcatcgtaactcttcatccgcgcagtagcagaaggaga
cggttgctaatgggtgactacgttgaagaaggttcaaatgagggggtagacgattcagat
gatgacgacggtatcagttcagatgagtcgtcttgtgattcctattcatcctgctcttca
tgcgaagcagccacccaatcaaacaacgacaagacaaaacacaccactcaacaacgaatg
gaaagaatagctatcatgacaaacgttcctccacaccaagtaccagacggagtactcaac
ttggtccgtgggcatcgtcccttcattgaacatgttcggatagtgattggttcctctcgt
tcggaagaggcagacaagcgtcgtgagcggagaaagcggaggcagctcgctatagtagca
cagagagaacagcaatccaagggagaactagttaggaggaggtcgcagacttggacttgt
gagaatgaagaagaggccgggagcaaatctttgggggcttcaatgtcagcagtttccata
ggtggcacatttgacaatcagagtagtatgacttccagcgaacatttgacgagagattct
agatcatcttcgttggatgtgctgacaccattgtatcaaaaggggcctgcggtagatact
tctggattcggggaggaaaagagcgaatttggtgataaagatgaggatgacgaggaaaag
aagtaccaccttttgtttgtattggattctgaagcctcggccgagtcttttgtatcggat
cttcaccatagaccattcactacgttggacgagtcagagacatgttcagtctaccacgca
ctacatgtagagggagaagcaggtgtgaatctactcggtcctttcttcgcatcgtcaaca
acatcttcaaatcatcagtcaacaactatagcagaggatacgtctgcagagcaccagtgc
ccagtgtgtcttgagaaaatgacattgccgtcagtgacatcaacgtcggactctgcagct
gcatcatcttcaatccttactaccgtctgcaatcattccttccatattgattgtcttgcg
aggtggcaggattctccctgtccggtgtgtcgatacgatcattcaggcctgaacgacacg
ctatcacaatgccacgtctgttccactactgtgaggaactacgtctgtctcatttgtgga
gtgatatcatgcgcaacgggtccttcatcgtcttcgcacaacgcagcagttgaaacggac
aatccactcgcagcacaaccttctcaaagaggacatgccttgagacattacgaagagagt
ttgcatgcatatgctcttgatacggagacacaacacgtatgggactttgcaggaggtggt
tatgttcatagactgattcaaaacgcagaagatggtaagattgtggaaggggcagatcca
aggctagtagacgaagagcggttcctccatcaaaatgatgatgaggatgacgaggcagta
catcgaaagcttgaaggctatgcagggcagtactacacgcttctcaagtctcaattggag
cagcaacggatcttttacgaaggaaaactagagtcaatacgccgagagtatgggcatgaa
tcgtcaggtcgcgaatctcaatctacctccgatctcatctctgccctcaaacaagaacgt
aatcaacttgaacaacgttgcagcactctgagacgcaaacacaggaaggtgaacgatgat
gtcatgtttctcaaggatatgaatgagagtctagagaatgacaaggttgcgtttcggaag
cagattggcgaagcgcaagcggaacttgccacggccaagaaaatgacacaacaaatgttg
agtcctatggagggaaaggttcatgaacttatgcttcagttgacaggggatgacagttag
DBGET
integrated database retrieval system
