Thalassiosira pseudonana: THAPSDRAFT_6383
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Entry
THAPSDRAFT_6383 CDS
T01078
Name
(RefSeq) 19kDa subunit of RNA polymerase
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_6383
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_6383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_6383
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_6383
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_6383
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
THAPSDRAFT_6383
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
THAPSDRAFT_6383
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
THAPSDRAFT_6383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
Motif
Other DBs
NCBI-GeneID:
7453303
NCBI-ProteinID:
XP_002291165
JGI:
6383
UniProt:
B8C460
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All DBs
Position
6:1441604..1442155
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AA seq
183 aa
AA seq
DB search
MFYVKTLEHEIELEPIHFGQKLRATIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGI
IEYDTGNVVFYVKYTALLLRPFINEVVDATVAQCNELGFFAYVGPLRIFVSKHSMPEDMF
NGFDGERDSWVSDDKEVVIASGCGVRLKIKGRTVEQGNITAIGTIKDNYLGLIDDGSGEA
EVM
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgttctacgtaaagacgcttgaacacgaaatagaactggagccaatccactttgggcaa
aaacttcgagccactatcgtccgtctcctcaaggaggaggtggaaggactggccctggcc
aactacggattcgtagtcaatgtgattgaagtcccagaggaacaaatccgctcgggaata
attgaatatgataccggaaacgttgtattctacgtcaagtacacggcattattgcttcgg
ccatttattaacgaggtggtggatgcaacggtagcacaatgtaacgagctgggattcttc
gcctacgtggggcctctgcgtatctttgtgtcgaaacactccatgccagaggatatgttc
aacgggtttgacggggaaagagactcgtgggtgagtgatgataaagaggttgtgattgca
tctgggtgtggtgtaaggttaaagattaaggggaggacggtggagcagggaaacattaca
gcgattggaacgattaaggacaattacttgggattgattgatgatggaagtggcgaggct
gaagtgatgtga
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