KEGG   Thalassiosira pseudonana: THAPSDRAFT_6383
Entry
THAPSDRAFT_6383   CDS       T01078                                 
Name
(RefSeq) 19kDa subunit of RNA polymerase
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tps  Thalassiosira pseudonana
Pathway
tps03020  RNA polymerase
tps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THAPSDRAFT_6383
  09124 Replication and repair
   03420 Nucleotide excision repair
    THAPSDRAFT_6383
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_6383
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_6383
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_6383
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     THAPSDRAFT_6383
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     THAPSDRAFT_6383
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      THAPSDRAFT_6383
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 7453303
NCBI-ProteinID: XP_002291165
JGI: 6383
UniProt: B8C460
LinkDB
Position
6:1441604..1442155
AA seq 183 aa
MFYVKTLEHEIELEPIHFGQKLRATIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGI
IEYDTGNVVFYVKYTALLLRPFINEVVDATVAQCNELGFFAYVGPLRIFVSKHSMPEDMF
NGFDGERDSWVSDDKEVVIASGCGVRLKIKGRTVEQGNITAIGTIKDNYLGLIDDGSGEA
EVM
NT seq 552 nt   +upstreamnt  +downstreamnt
atgttctacgtaaagacgcttgaacacgaaatagaactggagccaatccactttgggcaa
aaacttcgagccactatcgtccgtctcctcaaggaggaggtggaaggactggccctggcc
aactacggattcgtagtcaatgtgattgaagtcccagaggaacaaatccgctcgggaata
attgaatatgataccggaaacgttgtattctacgtcaagtacacggcattattgcttcgg
ccatttattaacgaggtggtggatgcaacggtagcacaatgtaacgagctgggattcttc
gcctacgtggggcctctgcgtatctttgtgtcgaaacactccatgccagaggatatgttc
aacgggtttgacggggaaagagactcgtgggtgagtgatgataaagaggttgtgattgca
tctgggtgtggtgtaaggttaaagattaaggggaggacggtggagcagggaaacattaca
gcgattggaacgattaaggacaattacttgggattgattgatgatggaagtggcgaggct
gaagtgatgtga

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