Thalassiosira pseudonana: THAPSDRAFT_649
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Entry
THAPSDRAFT_649 CDS
T01078
Name
(RefSeq) predicted protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_649
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_649
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_649
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THAPSDRAFT_649
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
THAPSDRAFT_649
mRNA cycle factors
Common to processing body (P body) and stress granule
THAPSDRAFT_649
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
THAPSDRAFT_649
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
THAPSDRAFT_649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
PSP
Motif
Other DBs
NCBI-GeneID:
7448103
NCBI-ProteinID:
XP_002292510
JGI:
649
UniProt:
B8C8H3
LinkDB
All DBs
Position
9:complement(840377..842291)
Genome browser
AA seq
365 aa
AA seq
DB search
MWSIPIASANRDLMACAQTGSGKTAGFLFPIIITMLRNGGTEPEGGVRGRRTYPECLVLA
PTRELASQIQDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCDLLVATPGRLVDLIER
GRLSMENVKFLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFSATFPANIQRLA
GDFMRDYIFLTVGRVGSASENVVQSVEYVEQNDKLDALMRFLLTIQEGLILIFVETKRNC
DFVEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARGLDIPNVTQVV
NYDLPTNIDDYVHRIGRTGRAGNTGAALSFVNEKNSGVARELRELLEESGQEVPPWLNQM
TSYGG
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtatccctattgctagtgccaaccgtgatttgatggcgtgtgctcaaactggg
tctgggaagactgcgggatttctcttccccattatcatcaccatgttgaggaacggaggt
accgaacccgaaggtggagttcgtggaaggagaacatatcccgagtgtttggtattggct
cccacgagggaattggcgagtcagattcaagacgaggcgcaaaagttcttgtactgcacg
ggtattgccagtgtggttgtgtatggaggtgcggatgttcgtgatcagttgaggcaaatt
gaacgtgggtgtgatcttttggtcgctactcctggacgtcttgtcgatcttattgagcgt
ggaaggctttctatggagaatgtcaagttcttggtgttggatgaggcagatcgtatgctt
gatatgggatttgagcctcagattcgtcgtattgtggaacaggagggtatgcctcacggg
gatgatcgtcagactatgatgtttagtgccacgtttcctgccaatattcagcgtcttgca
ggagatttcatgagggactacatctttctcactgtgggacgtgtcggatctgcttcggag
aatgttgttcagtctgtggagtacgttgaacaaaatgacaagcttgatgcattgatgcgc
ttcctccttactattcaggaaggacttattctcatctttgtggagacgaagcgtaattgc
gactttgtggaagatattctatgcgagagggggttcccggcttgttctattcatggggat
aagagtcagagggagcgtgaggattcgcttcgtgctttcaagactgggcgttgtcccgtt
cttgtggctactgacgttgccgcccgtggattggatatccccaacgttactcaagttgtg
aactacgatttgcccaccaacattgacgattacgtgcaccgtatcgggcgtactggtcgt
gctggaaacacgggagctgccttgtcgtttgtgaatgagaagaactcaggtgtggctagg
gagcttcgtgagttgttggaggagagtggacaagaggttcctccttggttgaatcaaatg
actagttatggagggtga
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integrated database retrieval system
