Thalassiosira pseudonana: THAPSDRAFT_6584
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Entry
THAPSDRAFT_6584 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
tps03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_6584
03015 mRNA surveillance pathway
THAPSDRAFT_6584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_6584
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_6584
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
THAPSDRAFT_6584
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
THAPSDRAFT_6584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
7446362
NCBI-ProteinID:
XP_002291663
JGI:
6584
UniProt:
B8C4R1
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All DBs
Position
6:complement(1953210..1954817)
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AA seq
535 aa
AA seq
DB search
MPTIKGTASISSQHALQKQLRSTTFPPNFSQKCNIAKLHRGVLQHWIETRVEDILGFEDE
IVSSTAVHLFLPGGEDGGEAAAAREVDPRRAQLDLAGFLGEKEAAEFAAELWSLMLDGER
SPSGIPKVLVEKKKEEMRLAREKQRGGSPAARRAPADPAMNDFVREAARRAEAARAAIAG
ARAGQARDGGAVAAVAVPPSPSPPRDSGRNQQQQQQQQQYQRGAGRRDYEYDNRRRNDQY
PDHRRGGDGRYNRRDDYYSRDPRRYDNLDRRYDDRRQRDEYYNDRGRGGGEELDEFGRSR
GGGGGGGGGAKKKEEDVPYKGGSSKRDGDVDDDDRKPEAKRDSPKTKGNDVHDKNERAPS
KEKQQPQKRGRSHSSSRSRSYSSSSRSHSRSRSSSYSSRSRSRSRSLSYASFPSPKREEK
HRRQSSGSSRDVGRGKRNSSRNERRSSNSSSKHRHERRHKHHHHHHHRNERKRGNKRSRR
SRSASSQSSVSEDGSKERRRRSRRGRDSGGGSRDENGKERRRSSSSHGGGDGRRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccatcaagggaaccgcctccatctcctcccaacacgccctccaaaaacaactc
cgctccaccaccttcccccccaacttctcccaaaaatgcaacatcgccaaactccaccgc
ggcgtgctccaacactggatcgaaacgagggtggaggacattctgggcttcgaggacgag
atcgtgagcagcacggcggttcatctcttcttgcccggcggcgaggacgggggcgaggca
gcagcagcgagggaggtggacccgcgacgggcgcagttggacctggccggctttctgggc
gagaaggaagcggccgagttcgcggccgagttgtggagtttgatgttggacggggagagg
agtccgagtggcattccgaaggtcttggtggagaagaagaaggaggagatgcggctcgct
cgggagaaacagcggggagggtctcctgcggctcgtcgtgctccggcagacccggcgatg
aacgactttgtgagggaggcggctcgtcgtgccgaggccgcgagagcggccattgcaggg
gctcgtgcagggcaagcgagagatgggggcgctgttgcggcagtggccgttcctccgtct
ccaagtcctcctcgagacagtgggcgtaatcaacaacaacaacaacaacaacagcagtat
caacgtggagcagggaggagagactacgaatacgacaacagacggaggaacgatcaatac
cccgatcatcgtcgtggaggagatgggaggtacaatcgacgtgatgactattacagcagg
gatcccagacgatatgacaatcttgacagaaggtacgatgataggagacaaagagatgaa
tattacaatgatcgtggacgtgggggaggagaagagttggatgagtttggtcgtagtaga
ggtggtggtggtggtggtggtggtggagccaagaagaaggaggaggatgtaccttataaa
ggtggcagcagcaaacgtgatggtgatgtggatgacgatgatcgtaagccagaggcgaag
cgtgattctcccaagacgaagggcaatgatgtccacgacaagaacgagagggcaccatcc
aaagagaagcagcaaccacagaaacgaggaagatctcactcctcatcgagatctagatca
tactcttcttcctctcgttctcattctcgctctcggtcctcttcctactcatcacgatca
aggtctcgatccagatctctctcatacgcatcatttccttctccaaaacgtgaggagaag
catcgcagacagagcagtggaagcagtagggacgtgggacgtggcaaacgcaacagtagt
aggaatgaacgacgcagcagcaacagcagcagcaagcaccgtcacgagaggagacacaaa
caccaccatcatcatcaccatcgtaatgaacgcaaacgaggcaacaagcgctcacgtagg
tcgcgttcggcatcgtctcagtcgtcggtgtcggaggatggttcgaaggagaggaggagg
cgtagtagacgtggtcgtgatagtggtggtggcagtagagacgagaatgggaaggagaga
aggaggtctagttcaagtcatggcggtggcgatggaaggaggaggtag
DBGET
integrated database retrieval system