KEGG   Thalassiosira pseudonana: THAPSDRAFT_6584
Entry
THAPSDRAFT_6584   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_6584
   03015 mRNA surveillance pathway
    THAPSDRAFT_6584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_6584
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_6584
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     THAPSDRAFT_6584
Spliceosome [BR:tps03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    THAPSDRAFT_6584
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 7446362
NCBI-ProteinID: XP_002291663
JGI: 6584
UniProt: B8C4R1
LinkDB
Position
6:complement(1953210..1954817)
AA seq 535 aa
MPTIKGTASISSQHALQKQLRSTTFPPNFSQKCNIAKLHRGVLQHWIETRVEDILGFEDE
IVSSTAVHLFLPGGEDGGEAAAAREVDPRRAQLDLAGFLGEKEAAEFAAELWSLMLDGER
SPSGIPKVLVEKKKEEMRLAREKQRGGSPAARRAPADPAMNDFVREAARRAEAARAAIAG
ARAGQARDGGAVAAVAVPPSPSPPRDSGRNQQQQQQQQQYQRGAGRRDYEYDNRRRNDQY
PDHRRGGDGRYNRRDDYYSRDPRRYDNLDRRYDDRRQRDEYYNDRGRGGGEELDEFGRSR
GGGGGGGGGAKKKEEDVPYKGGSSKRDGDVDDDDRKPEAKRDSPKTKGNDVHDKNERAPS
KEKQQPQKRGRSHSSSRSRSYSSSSRSHSRSRSSSYSSRSRSRSRSLSYASFPSPKREEK
HRRQSSGSSRDVGRGKRNSSRNERRSSNSSSKHRHERRHKHHHHHHHRNERKRGNKRSRR
SRSASSQSSVSEDGSKERRRRSRRGRDSGGGSRDENGKERRRSSSSHGGGDGRRR
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgccaaccatcaagggaaccgcctccatctcctcccaacacgccctccaaaaacaactc
cgctccaccaccttcccccccaacttctcccaaaaatgcaacatcgccaaactccaccgc
ggcgtgctccaacactggatcgaaacgagggtggaggacattctgggcttcgaggacgag
atcgtgagcagcacggcggttcatctcttcttgcccggcggcgaggacgggggcgaggca
gcagcagcgagggaggtggacccgcgacgggcgcagttggacctggccggctttctgggc
gagaaggaagcggccgagttcgcggccgagttgtggagtttgatgttggacggggagagg
agtccgagtggcattccgaaggtcttggtggagaagaagaaggaggagatgcggctcgct
cgggagaaacagcggggagggtctcctgcggctcgtcgtgctccggcagacccggcgatg
aacgactttgtgagggaggcggctcgtcgtgccgaggccgcgagagcggccattgcaggg
gctcgtgcagggcaagcgagagatgggggcgctgttgcggcagtggccgttcctccgtct
ccaagtcctcctcgagacagtgggcgtaatcaacaacaacaacaacaacaacagcagtat
caacgtggagcagggaggagagactacgaatacgacaacagacggaggaacgatcaatac
cccgatcatcgtcgtggaggagatgggaggtacaatcgacgtgatgactattacagcagg
gatcccagacgatatgacaatcttgacagaaggtacgatgataggagacaaagagatgaa
tattacaatgatcgtggacgtgggggaggagaagagttggatgagtttggtcgtagtaga
ggtggtggtggtggtggtggtggtggagccaagaagaaggaggaggatgtaccttataaa
ggtggcagcagcaaacgtgatggtgatgtggatgacgatgatcgtaagccagaggcgaag
cgtgattctcccaagacgaagggcaatgatgtccacgacaagaacgagagggcaccatcc
aaagagaagcagcaaccacagaaacgaggaagatctcactcctcatcgagatctagatca
tactcttcttcctctcgttctcattctcgctctcggtcctcttcctactcatcacgatca
aggtctcgatccagatctctctcatacgcatcatttccttctccaaaacgtgaggagaag
catcgcagacagagcagtggaagcagtagggacgtgggacgtggcaaacgcaacagtagt
aggaatgaacgacgcagcagcaacagcagcagcaagcaccgtcacgagaggagacacaaa
caccaccatcatcatcaccatcgtaatgaacgcaaacgaggcaacaagcgctcacgtagg
tcgcgttcggcatcgtctcagtcgtcggtgtcggaggatggttcgaaggagaggaggagg
cgtagtagacgtggtcgtgatagtggtggtggcagtagagacgagaatgggaaggagaga
aggaggtctagttcaagtcatggcggtggcgatggaaggaggaggtag

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