Thalassiosira pseudonana: THAPSDRAFT_6610
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Entry
THAPSDRAFT_6610 CDS
T01078
Name
(RefSeq) predicted protein
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_6610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_6610
03110 Chaperones and folding catalysts [BR:
tps03110
]
THAPSDRAFT_6610
03029 Mitochondrial biogenesis [BR:
tps03029
]
THAPSDRAFT_6610
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_6610
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
THAPSDRAFT_6610
Messenger RNA biogenesis [BR:
tps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
THAPSDRAFT_6610
Chaperones and folding catalysts [BR:
tps03110
]
Heat shock proteins
HSP60 / Chaperonin
THAPSDRAFT_6610
Mitochondrial biogenesis [BR:
tps03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
THAPSDRAFT_6610
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
THAPSDRAFT_6610
Exosomal proteins of other body fluids (saliva and urine)
THAPSDRAFT_6610
Exosomal proteins of breast cancer cells
THAPSDRAFT_6610
Exosomal proteins of colorectal cancer cells
THAPSDRAFT_6610
Exosomal proteins of bladder cancer cells
THAPSDRAFT_6610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
7446378
NCBI-ProteinID:
XP_002291674
JGI:
6610
UniProt:
B8C4T7
LinkDB
All DBs
Position
6:complement(2029022..2031689)
Genome browser
AA seq
590 aa
AA seq
DB search
MKFHVTALSMVYLASECSAFTANSNSFQATRRLSSTALSAKRVSFKEESRKKLVDGINQV
ANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLADPECNVGVRLVQEVASKSDS
KAGDGTTTSTIMTQAIVNNGMKAVTSGVNPIALNAGIKKSAGMVAAKIKELSQKINGVED
LQSVATIASGSVDMGRIIAQAFDKVGENGSTVIEESQTLFDEIEFTEGLTIDRGYISPYF
VKDQERQVAELVNPRILVTDAKIDNVNEIVPLLEQLVKTKEPVLMIAEDVTGDALSALVV
NKMRGVLDVVAIRAPGFGQRRKAYLQDIAIATGATYVAEEVGITLDSVTTDMLGTADRCV
IAKELTTIVTDGKQEDAVIARIAQIKREGEEADTDFDRDKAQERVAALGGGIARIKVGAA
TETELKDKKLRYEDALNSVQSARELGIVPGGGACLAYIQDQFTDEILAAFDDEDQRAGAA
ILMKSLSEPCCQVAENAGVEGAVVLSKIVELTREKGFGHGWDASKNNYCDLMEAGVVDPA
KVTINAVENSASVAGLVLTTECLVTEIPVFESEEDMQRRFDAEGMGMGMV
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccacgtgacggcgttgtcaatggtgtatctggccagcgaatgctccgccttc
accgccaacagcaacagcttccaagcaactcgtcgtctctcgtccaccgccctctctgcc
aagcgagtgtcgttcaaagaggaatctcgcaagaagctggtggatggaatcaaccaggtg
gccaacgccgtcaaggtgacgttgggccccaaaggccgcaacgtggtgctggagcgtaac
tatggagctcccgagatcgtcaacgacggagtgaccatcgcacgtgagatctcgctggcc
gatccggaatgcaacgttggagtgaggctggtgcaggaagtggcgtccaagagtgacagc
aaagcgggagacggaacaacgacgtctaccatcatgactcaggcgattgtcaacaacgga
atgaaggccgtcaccagtggggtcaatccgattgcgttgaatgcgggcattaagaagtcg
gctggtatggttgcagccaagatcaaggaattgagtcagaaaatcaacggagtggaagat
ctccaatctgttgccaccattgcctccggatccgtcgacatgggacgtatcattgcccaa
gcttttgataaagtgggagagaacggatccaccgttatcgaggaatcacaaactcttttt
gatgaaattgaattcaccgaaggtctcaccattgaccgtggatacatctcaccgtacttt
gtcaaagatcaggaacgtcaagtggcggaattggtcaacccaagaatcctcgtcaccgat
gcaaagattgacaatgtcaatgagattgttcctctccttgaacagcttgtcaagaccaaa
gagcccgtgctcatgattgccgaggatgttactggtgacgccctctcggctctcgtcgtt
aacaaaatgagaggagtccttgatgtcgttgccattcgtgccccaggattcggacaacgt
cgtaaggcttacctccaagatatcgccattgccaccggtgccacctacgttgccgaggag
gttggaatcactcttgactccgtcaccactgacatgcttggaactgccgaccgatgtgtc
attgccaaggagctaaccactatcgttacggatggaaagcaggaggatgccgtgattgct
cgtatcgctcaaatcaaacgtgagggcgaggaggccgatactgactttgacagagataag
gcacaggagcgtgttgctgcccttggaggaggtattgcacgtattaaagtaggtgctgcc
actgagacggagctcaaggataagaaacttcgatacgaggatgctttgaattcggttcag
tcggcgagggagttgggaattgtgcccggaggaggcgcttgtcttgcttacattcaagat
caattcacggatgagatattggcagcgtttgacgatgaggatcaaagggctggggctgct
atcttgatgaagagtttgagtgagccttgctgtcaggtggctgagaatgccggtgtggag
ggagctgttgtcctgagcaagattgtagagttgacaagggaaaagggattcggacacgga
tgggatgcctccaaaaacaactactgcgacctcatggaggctggtgtcgtcgatcctgcc
aaggttacaatcaacgccgtagaaaactctgcaagtgtagctggtctcgtgctgacaact
gaatgcttggtaacagaaattcccgtgtttgagagtgaggaagatatgcagaggaggttt
gatgccgagggtatgggaatgggtatggtttag
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