Thalassiosira pseudonana: THAPSDRAFT_723
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Entry
THAPSDRAFT_723 CDS
T01078
Symbol
rfC2
Name
(RefSeq) replication factor C 36 kDa subunit
KO
K10756
replication factor C subunit 3/5
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_723 (rfC2)
03410 Base excision repair
THAPSDRAFT_723 (rfC2)
03420 Nucleotide excision repair
THAPSDRAFT_723 (rfC2)
03430 Mismatch repair
THAPSDRAFT_723 (rfC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_723 (rfC2)
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_723 (rfC2)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_723 (rfC2)
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
THAPSDRAFT_723 (rfC2)
DNA Replication Termination Factors
ELG1-RFC complex
THAPSDRAFT_723 (rfC2)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
THAPSDRAFT_723 (rfC2)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
THAPSDRAFT_723 (rfC2)
Check point factors
HRAD17(Rad24)-RFC complex
THAPSDRAFT_723 (rfC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_16
AAA_11
RuvB_N
RCF1-5-like_lid
AAA_24
AAA_assoc_2
AAA_5
AAA_30
AAA_14
AAA_19
DEAD
AAA_7
AAA_3
MCM
bpMoxR
DUF815
AAA_18
ATPase_2
Aldedh
Mg_chelatase
TIP49
DUF759
Motif
Other DBs
NCBI-GeneID:
7452972
NCBI-ProteinID:
XP_002293495
JGI:
723
UniProt:
B8CB01
LinkDB
All DBs
Position
13:complement(120909..122016)
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AA seq
321 aa
AA seq
DB search
MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYG
STAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSDAQFAL
RRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAEKCNYT
EDGIQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKNVYMTSGAPLPRDVHVAMEWLMNLE
FKDVYEKLTNMCSTKGYALTDILTELANKVTEANFPPGVLAVLLDGMSDVEHRLAFGTDE
KLQAASLVGVFVKGRHVMKIA
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgccatgggtggagaaataccgtcctgccaaattggaagatttggtagcgcacgaggat
attgtggcgattttgacgaggttgattgacagtgacaatttgcctcatttgttgctgtat
ggtcctcctggaactggaaagacctccaccatagtagccgccgccaaacgaatgtacggc
tccaccgccgcctactcctccatggcacttgaactaaacgcctccgactctcgaggaatc
gatgtcgttcgcaacgaaatcaaagaattcgcaggcacgcgacagctattccacagcgga
atcaaacttatcatattagacgaggcggatgccatgacgagcgatgctcagtttgctttg
aggagggtgattgagaagcataccaagaatgcacggttttgtttgatttgtaattatgtg
agcaagattatacccgcgttgcagagtcggtgtacgaggtttcgatttgctcctttgaaa
caagagcagattcggagtaggttggtggaggtggccgatgcggagaagtgtaattatacg
gaggatgggattcaagccattttggacttgagtggaggcgatatgaggagggtgttgaat
ttgttgcagagtacggccatgggaagtgagattgtggatgaaaagaatgtgtacatgacg
agtggggcaccgttgccgagggatgtgcatgtggcaatggaatggttgatgaacttggag
ttcaaggacgtgtatgaaaagttgacaaatatgtgttctaccaaggggtacgcattgacg
gatatcttgacagagttggcaaacaaggttacggaggcaaactttccaccgggggttttg
gcagtgttgttggatggaatgagtgatgtggagcatagattggcatttgggacggatgag
aagttgcaggctgcttcgttggtgggggtgtttgtcaaggggaggcatgtgatgaagatt
gcatag
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