Thalassiosira pseudonana: THAPSDRAFT_8542
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Entry
THAPSDRAFT_8542 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10754
replication factor C subunit 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_8542
03410 Base excision repair
THAPSDRAFT_8542
03420 Nucleotide excision repair
THAPSDRAFT_8542
03430 Mismatch repair
THAPSDRAFT_8542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_8542
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_8542
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
THAPSDRAFT_8542
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
THAPSDRAFT_8542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_30
RNA_helicase
AAA_22
Rad17
RuvB_N
Sigma54_activ_2
AAA_assoc_2
AAA_14
AAA_16
AAA_19
AAA_33
nSTAND3
AAA_5
Sigma54_activat
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
7450752
NCBI-ProteinID:
XP_002292715
JGI:
8542
UniProt:
B8C9T1
LinkDB
All DBs
Position
10:854263..858068
Genome browser
AA seq
1233 aa
AA seq
DB search
MDIRNFFGGGKKKPKSDAAAAAPRSSTAKKSNGKSTTATTTKKEEPAASNRSRNGDKKAS
TTTSPSSTTKKEASKKTVAKQQRQIGSDDDTEMEDNAPAKKESPPRSSPRKRKDPPTKKA
NDGDYDDDDDDGLMDDDFEEIVAKKPAISSSGGGNRGLFARKREGKKVTKRKIVIDSDSD
DEVDVVVGKKSNDGKSEDDDDGDEDFKGAGDNSSDDSDEEVKEKPKGKKRAASPPKKKPP
TPTKKAAPPPHAKKLMPKAPEKETPPKYHPPSSKLTANIPYLKNDTTILIQTELPKLPKT
DKSLSDTFSIDNMTPMCLEGITFVFSGILTTNDAKTRETNSSIALNSPSKGEYYQNRNAY
TTSTISGVGCDEELARDLASDLVLSLGGKVTSAVSGKTDYLVVGSILEDGREVEEGSKYR
KALEIWEVWKEKNRVAYKKAHTDGGGDDDGESEEESGGKAKKRKVVKKKPQAKSADPNSL
VEIIRGVQEFYGLITFLSDWKKGTLPEEEQRRLERQMSGVKEEANPAAAAPVATLSLPAA
SATPTPRSAASAVVNPYATTAVANPYNNGKPAVSNPYAKAPPPNPYAKKSPANPYAAKLS
SSVPSSAHPAQKFGAASTTTHHQDHSGKVHINALWADKYAPINTQEILGNGGNVSKLTNW
LKNWEHQFNNPKRKVKSVSGPNGPWKAALLSGPPGIGKTTTATLVARESGRDLLELNASD
ARSKKSLSQALGDVTGSQVLNFRTGDGKVKHVAQKRCIIMDEVDGMGAGDRSGMSELIQM
IKNSKVPIICICNDRSSQKMKSLVQYCMDLRFQRPNKKTIGRRAVEIGRVEGMEVEENAA
EAMSESCGNDIRQVLNCMQMWSCKKNEAGQSSSVTYKDLKDRQSDINKDEVLRVSMFDAT
KLIVEGPRDTGSDAKKNNDSFFKRTDAFFVDYMLMGLNIHQNYLKVCVGQYNNAKTRGDD
DLELAALDAVHDATLAMSDFGIVEENLRGGDQNWALLPLCSVLAAKVGFHAGGPTGGFLP
GYPEFAGWLGKNSTRNKKIRLLGELRHHMNFKVSADSPELRMNYLPIMREQFQELLFCKD
GPRVTEAIALMDEYGLDRDDVFENLDEFILTSADSKEKKFGDMDSKAKAAFTRAYNQLAH
KAQALVSEQGAAKTSRRKSTGGALEAAEAGDLDVVDDDKALAADDDDNNNDEEDLDKLMD
MFKKKNGRGGGKTAKPKAAKGTAKSRGATGKKK
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggacattcgcaacttctttggaggaggcaaaaagaagcccaaatccgacgcagcagca
gcagctcctcgctcttccactgcaaagaagtccaatggcaaatctactactgccactact
actaaaaaggaggagccagccgcatccaatcgcagcaggaacggggacaaaaaggcaagc
accaccacatccccatcttcaacaacaaagaaggaggcatccaaaaagacggttgcaaag
cagcaacgacagattggcagtgatgacgacactgaaatggaggacaatgcaccagccaaa
aaagagtctcctccaaggtcatcaccacgcaaacgaaaagatccacctaccaagaaggcc
aatgacggtgattatgatgacgacgatgatgatggtttgatggatgatgattttgaggaa
attgttgcaaagaaaccagctattagcagtagtggtggtggcaatcggggattgtttgct
agaaagagggagggcaagaaggttaccaaacgcaagattgtgattgattcagatagcgat
gatgaagtggatgttgttgttggaaagaagtcaaatgatgggaaaagtgaggacgatgac
gacggagatgaagactttaagggcgcgggagacaacagtagcgatgacagtgatgaagag
gtcaaagaaaagcctaagggaaagaaacgtgctgccagtccaccaaagaagaaaccacct
acccccaccaaaaaggcagcaccacctcctcacgcaaagaaactcatgcccaaagctccc
gaaaaagaaacaccaccaaagtatcaccctccctcctccaaactcaccgcgaacatcccc
tacctcaaaaacgacaccaccatcctcatccaaacagaactccccaaactccccaaaaca
gacaaatccctctccgatactttctccatagacaacatgacccccatgtgtctcgaagga
atcacctttgtcttttctggaatactcactaccaacgatgccaagacacgtgagactaat
tcgtcaattgcgttgaacagtccttccaaaggagagtattatcaaaatcgaaatgcgtat
actacctcgactatttcgggggtgggatgtgacgaagagttggcgagagatttggcatcg
gatttagtgttgagtttaggggggaaggtgactagtgcggtgagtggcaaaactgattat
ttggtggtggggagtatattggaggatggacgggaggtggaggaggggagtaaatatcgc
aaggctttggagatttgggaggtgtggaaggagaagaatcgtgttgcttataaaaaggct
cataccgatgggggcggagatgatgatggcgagagtgaagaagagagtggaggcaaggcg
aagaaacgaaaggtggttaagaagaagccacaggcaaagagtgcggatcctaattcgttg
gtggagattattcgtggagtgcaggagttttatggattgattacgttcttgagtgattgg
aagaaggggacgttgccggaggaggagcagaggaggttggagaggcaaatgtcgggcgtg
aaggaggaggcaaatcctgcagctgctgctcctgttgctacattgtcgctaccggctgca
tcagctactcctactcctagaagtgcagcctctgcagttgtcaatccgtatgcgacgacg
gctgtggcgaatccctacaacaatggcaagcctgccgtgtcgaatccatatgcaaaggca
cccccacccaatccgtatgccaaaaaatctcctgccaatccatacgctgccaaattatct
tccagtgttccctcctctgcacatccagcacaaaagtttggagcagcttctaccactacg
catcatcaggatcattccggaaaggtacacatcaatgcactttgggctgataaatatgca
ccgatcaacactcaagagattctgggtaatggtggcaatgtgagcaagcttaccaactgg
ttgaagaactgggagcatcaattcaacaaccccaaacgaaaagtcaagtcggtttcggga
ccgaatggaccgtggaaggcggcgttgttgtcgggtcctcctggcattggaaagactacc
actgccactttggtagcgagggagtctggacgtgatttgttggagttgaatgcttcggat
gctcgctcaaagaagtctttgtctcaagctttgggagatgtaacggggtcgcaggttctc
aactttcgaactggggatggtaaggtaaaacacgttgctcagaaacgatgcattatcatg
gacgaagttgatggaatgggtgctggtgatcgttcgggaatgtccgaactcatccaaatg
atcaagaactccaaagttcctatcatttgcatctgtaacgatcgttcctcgcaaaagatg
aagtctctcgttcagtactgtatggatttgcgattccaacgccccaacaaaaagacgatt
ggcaggagagccgtggagattggaagagtggagggaatggaagtggaagaaaatgctgct
gaggcaatgtctgaatcgtgtggaaatgacatccgtcaggtgttgaattgcatgcagatg
tggtcatgtaagaagaacgaggctgggcagagttctagcgtgacgtacaaggacttaaag
gatcgccagagtgatatcaacaaggatgaagtgttgcgagtgagcatgtttgatgccacc
aagttgatcgtggaagggcctcgtgacactggctcggatgccaaaaagaacaatgacagt
ttctttaaacgaacggatgccttcttcgttgactacatgctcatgggtttgaacattcat
cagaactatctcaaggtgtgcgttggtcaatacaacaatgctaagactcgtggagacgat
gatttggaattggcagcactcgatgcagtacatgatgctactttggcaatgtcggacttt
ggaatagtggaggagaatctacgtgggggtgatcagaactgggctcttcttccgctgtgc
tctgttcttgctgctaaggttggatttcacgccggtggacccactggaggattcttgcct
gggtatcctgagtttgctggatggcttggaaagaactcaactcgcaacaaaaaaattcgg
ttgttgggagagcttcgccaccacatgaacttcaaagtcagtgccgactctcccgagttg
cgtatgaattacttgcccatcatgagagagcagtttcaggagttgcttttctgtaaggat
ggaccgagggtgacggaagcgatcgcgctaatggacgagtatgggctggatcgtgacgat
gtctttgagaatcttgatgagttcatcctcacgtcagcagatagcaaggagaagaagttt
ggcgacatggacagtaaggcaaaggcggccttcactcgagcttacaatcaactagctcac
aaggcacaggcgttggtatctgagcaaggagccgcgaagacgtctcgtagaaagagtact
ggaggtgcattggaagcggccgaagcgggagatcttgatgtggtggacgatgataaggca
ttggccgcagatgacgacgacaacaacaatgacgaagaagacttggacaagttaatggat
atgttcaagaagaagaatggcagaggcggtggcaagacagccaagccaaaggcagccaaa
ggtactgccaaaagtagaggagcaacagggaagaagaaatag
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integrated database retrieval system
