Thalassiosira pseudonana: THAPSDRAFT_8733
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Entry
THAPSDRAFT_8733 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
tps
Thalassiosira pseudonana
Pathway
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_8733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_8733
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
THAPSDRAFT_8733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
7443294
NCBI-ProteinID:
XP_002296556
JGI:
8733
UniProt:
B8LBW0
LinkDB
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Position
11
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AA seq
944 aa
AA seq
DB search
MSFQFDDNDSEEDIDLDDFDDTGLLALASRETAASRPSTDITSEVAAPRVAAELGVGITE
TSAYHDGEGDDRGDWSDVDWEDADQEDGEGEGIDSGGDGKQDNVDELQPRKFPSEGIMIN
FGASESNTNSTNSGDDNGDDAKDKEYKPKKWKRTRTLRDVPFATQQLVLNVRRAHMLCCI
SYSLGCSAVCGGGVMIHEDDIMKAASDDEMEGTRSFLTCLAHSLVPLEFHQSDTVDHGLQ
ATTKPKKSYIIPTTQQLHQFSQWYFGFVNRAGERRRAALERNVAQGAATTSFVVASRVSA
SKKRAITLGSNTNGRQATKSVELKDTKPPAKKQRRRGEADAPEDDEGGEKPSCTEPMMHQ
HYTSTTTSLVQKLKYFSPCYDEDPQLFIKEEGLDVIHAVESITPDEKVLIFLTMVRAMGW
RARYVVALNPLSLELTVDHPLLASNSELMSSTDCYGSLDQSNNKRVTKVPNEKEPNTNTD
NATMSETCLSWIEVLCGNDDSKLSNDDKRKPKSTPKQLVARWIPVFPEQETVDKPEEVES
ILAWIRDITTESSPSKKTTQTKKKSTRRNIARKSLRRQSSNSYAKKAPVSYVLATEHFPP
IMKSTTTPFDVSSKSLRGARFTDVTPRYANTWSRTLRLRGATARQLKAGGGKCVDEWWAT
SLKDINGMCSSAKNKSSLALANDIVNTEPEIRVSVTKTVSGSGKEVEVLEIDSSGDEKPA
AMDTNNDSGASDHDEHDNDESVELTKTTSKEAIPTSKKAFRENPFYVIPSVLNSQDVLHP
DAHKRICGVFKGELVYKRSDVSKALRAKKWLYEGRKVKENEIPTPAKQINARKKPTSQGQ
GFKALESYVTETTLPSKYSEAGDGNAMENLYGIWQTAPWSPPHVGPSDPIPTNEFKNVEL
ALLNPGLDLKVVGAIGHHLLEELSYIRITLSSCVKHISSGRVTP
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgagcttccaattcgacgacaacgacagcgaggaagacattgatctcgacgactttgat
gatacgggactactggccctggcgtctcgtgagactgctgcctctcgaccgtcaaccgac
atcaccagcgaggttgctgcaccacgtgtggctgccgaacttggtgtagggatcaccgaa
actagtgcttaccatgacggcgagggagatgacagaggtgattggagtgatgtagattgg
gaagatgccgatcaagaagatggcgaaggagagggaattgactctggaggcgacggcaag
caggacaacgttgatgagttgcaaccacgtaagttcccctcggaagggatcatgatcaac
tttggtgcctctgaatcgaacaccaacagcactaattcaggggatgacaacggagacgac
gccaaagacaaagagtacaagcccaagaaatggaaaagaactagaacgctacgtgatgtg
ccttttgcaacgcaacaactggtcctcaatgtacgacgtgctcacatgctttgttgcata
agttactctttgggatgctcagcagtgtgtggtggtggagttatgatccatgaagatgat
ataatgaaagcagcaagtgatgacgaaatggaaggcacaagaagtttcctgacgtgcttg
gcacacagtctcgttcctttggagtttcaccaaagtgatacagttgatcatggattgcaa
gcaacaacaaaaccaaagaaaagttacatcataccaacaactcagcaacttcatcagttt
tcgcaatggtactttgggttcgtgaaccgtgcaggagaacgacgtagagcagctcttgaa
cgaaacgttgcacaaggagcagcaacgacatcttttgttgttgcttctcgtgtgtcggct
agtaagaaacgtgcaataacgcttggctcaaacactaatggaaggcaagcaacgaaatca
gtggagttgaaagatacgaaaccacctgcaaagaaacaaaggcgaaggggagaagctgat
gccccagaggacgacgaggggggtgagaagccttcttgtactgaaccgatgatgcaccaa
cattacacttcaaccacaacaagtcttgttcagaagctgaagtatttctcaccatgttac
gacgaagatcctcaattatttataaaggaagaaggactagacgtcattcatgccgtggag
agtatcactcctgatgagaaggtgttgatctttcttacgatggtcagagcaatgggatgg
agggcaagatatgtcgttgcactcaatcctctctcgctggagcttacagttgatcatcct
ctattggcgtccaactcggaattgatgtcgtcaactgattgctatggcagtcttgatcaa
agcaataataaacgcgttacgaaggtaccaaatgagaaggagccaaacacaaatactgac
aatgcaactatgagcgaaacgtgtctatcgtggattgaagttctatgtggaaatgacgac
agcaagctatccaacgacgacaagcgaaagccaaaaagcacacccaagcagctagttgcg
agatggattccagttttcccagagcaggagactgttgacaaacccgaggaagtggaatct
attcttgcgtggataagagacattacgaccgagagctcccctagcaagaaaactacacaa
acaaagaagaaatcgacaagacgtaacatcgcaaggaaaagtctacgtcgtcaaagctca
aacagttacgctaagaaggctcccgtctcttacgtccttgcaactgaacactttcctcct
attatgaaaagtacaactacaccatttgatgtgagcagcaaatcattgagaggtgcgagg
tttactgatgtaactccacgatatgcaaatacatggtcgagaacacttcgtttacgagga
gcaacagcaaggcaactcaaagctggaggaggaaagtgcgtagacgagtggtgggcaacg
agtttgaaagatatcaatggtatgtgcagcagtgccaagaacaaaagctcgcttgcttta
gcaaacgacatcgtcaacacggagccagaaatacgagtatcggtaaccaaaacagtatca
ggctctgggaaggaagtggaagttcttgagattgacagctcaggcgacgaaaagccggct
gcgatggataccaacaatgattcaggtgcatcggatcacgacgagcatgataacgacgag
tcagtagagttgaccaagacaacttccaaagaagcgataccgacgagtaagaaggcattc
agagagaatccgttctatgtgattccttccgtgctcaactcgcaggatgtgcttcacccc
gatgctcataaacgtatctgcggtgtcttcaaaggagaactagtctacaaacgcagtgac
gtgagcaaggccttaagggcgaaaaaatggttatacgaggggcgaaaggtgaaggagaac
gaaataccaacgcccgcaaagcaaattaatgcgaggaaaaagccaacttcgcaaggacaa
ggattcaaagcgctagaatcgtacgtcacggaaacaacacttccatcaaagtattcagag
gctggagacggcaatgcgatggaaaacttgtacggtatttggcaaacagcgccttggtct
cctcctcatgttggtccgtctgatcctattcctaccaatgagttcaagaatgttgagcta
gcactactcaatccgggcttggatttgaaggtcgtaggggcaatcgggcaccatctatta
gaggaattgtcgtacattcgcataacgttgagctcttgcgtgaagcacatatcgagtggg
agagtcacgccgtag
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