Thalassiosira pseudonana: THAPSDRAFT_8748
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Entry
THAPSDRAFT_8748 CDS
T01078
Name
(RefSeq) predicted protein
KO
K11491
condensin-2 complex subunit D3
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_8748
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin II
THAPSDRAFT_8748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cnd1
HEAT_2
HEAT
HEAT_EZ
Cnd3
PDS5
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
7443302
NCBI-ProteinID:
XP_002296566
JGI:
8748
UniProt:
B8LBX8
LinkDB
All DBs
Position
11
Genome browser
AA seq
1682 aa
AA seq
DB search
MATTATAAANMASLFDEDENFSSRAGGLVLDLLALTSNESSVAPPTTVAEEIQTCGYQRK
ICEELLDIFVVARGKKLQQHQREKQTSTNGNNNSRDNPFIRTNIEYNNKKDAKPPTAPHP
TTLSIREALGGLPASTISQLATALTKLLTHRVETEFLLPGTQDVLGNVEALGMLEEGDEN
SVIGSGGDNLTLVGRASVSSGGGAKSAMTISSLGITAAQLYVELIGMKGAWGAGIVDVGG
ISAVSALVRRWCVECRGREPVGKPKNKTKKGGKQGKNGAPAAKRAKGAGNKKEGSRKSVR
ISESVAVFGGEDDDDESALLDDTAVAASNPDLNATFFVEEEDTEVTDKLTESGMILGGLK
LATTLGNAPMQVDYKNWSAEARESFLDAATAALATSSALLAGCKGRDVETALICQEAVCS
LEVALQSSVTPAKVVVDPMGVSPDAPTTGPLKQRKKNKVSPKEDFANKKRLQESGIYLLR
GLMPILNLKMEVPNGQVGKVAAYKTATSLLVTIITSISEEIRHNTNTKRNTRLSLSSLDM
SGSQTPKRGGRKSISFSHTPGNTKGKLGAGISPIANLQPPSLKKSITPRRTRSSNNVALS
ERPALHPILSLIMGMLHKLFTTKGLERAETRSRVCALGVLCLSHFPSMERTQMIKFVGDM
CESKISSHRMLGVELIGEILCTEWYWEDVAKENKKNGLITPFEKDDEENKMVSSSTVLLA
ALQGRLTDKSPTVRTRAAMALSEVVRKANVAQEEGMTLDGDVENTPMSDVAVSSKVLNEA
LCSIGTGLVDSLRRRASTDDRATVRKAAIIAWLQMLSLAQRKNQADFVVSNLDVSALCTL
CNDASVATRKAAADALTKLVKANYDSDEYTPQASALEMAWAHTVLPLVSDVEVTCVTKAV
EFFSSLIIEPIVELGRDTAEKLKEGSSTRYLVAWRILSKVSDSCKEAGGSRNGPGSLQTA
IQKLFVNAGNDCKSLAKNLLRAVYQVGAISLCLDRRTSQDSLMSHDSELEDDLFGIRTQS
MRTGAWCLLDALTSCLTNTSGKSSVAANVSLSQAVRSSNIDSSFLALSLTKLRSLSNSNE
VPYDKRAGLVTTSRDCLRVIARMGSFVPLDDARACFSDLLNDLDSFNVSIDLISAAVGAL
VSLTKRLCDESGKDVYTECEEWVGRLLTHCENAIEPSFSSVAKEGMVGEDEEQLLLRVLF
TVGELNMVGFSSQEEPAKQGSTRTNDLATEREPVRGLFVRPSHKMLQLVKLMLPNTLPMQ
SSTDNEMMPTPSTIRAHAFITLGKLCLRDQSLAKDCLNILARELHEDSTSDPAVQSNALM
VMGDLCVRYTNLVDKYLPFMASCLQAGEGKVPEAGSESRLSISFNRKIGGYSLVKKNAIL
LLSSLVLQDYIKWRGLFVYRFLAAVADEDDEVSCLAQTAIRGLLLEKQPNLLATSFVESV
FVLNSCKAHPIYATAASIGGSGSGVSVDFEGRAFLGGEGYHRRHEVYRMMLANMTDEQKL
RVTTDLVKRVLGGALETSGDLSAVCKLSPQASTKIPRSRVVSATQVLKDTLAILASPDIK
VGRRAMEDTENDDDIANGNSGKTEQRSRLNKEKLLSKISRKHLMEIVIPVLCNLKSIMEG
SRSPLLKDLMQYLGKIFRSFKTEVAEHLANDPTLLQELEYDTRMWEKKQRESLLNAEIVT
GS
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacagcaacagcggcagccaacatggcctccctcttcgacgaagacgaaaac
ttctcctcacgcgccggaggcctcgtgctagacctcctcgcgctcacctccaacgaatcc
tccgtcgcacctcccaccactgtggccgaggagattcaaacttgcggatatcagagaaag
atttgcgaggagttgctggacatatttgtggttgcccggggtaaaaagttgcagcagcat
cagcgagagaagcagacaagtaccaacggcaacaacaactcccgcgacaatccattcatc
cgaaccaatatcgaatacaacaacaaaaaagacgccaaaccacccaccgcgccgcatcca
accacactgagcattcgcgaggcactgggaggtctcccagcgtccaccatttcacaactc
gccacggcactcaccaagctgctaacgcaccgtgttgagaccgagttcttattgccgggt
acgcaggatgtgctgggcaatgtggaggcgttggggatgttggaggagggggatgagaat
agtgtcattgggagtggaggtgataatctaactcttgttggacgggctagtgtcagcagt
ggcggtggtgccaaatctgcaatgactatttcatcactcggaatcacagccgctcaattg
tacgtggagttgattggaatgaagggagcatggggagcgggtatcgtcgacgttggtgga
atcagtgccgtatctgcattagtgagaagatggtgtgtggaatgccgcggacgagagcca
gtgggcaaaccgaagaacaagactaaaaagggaggaaagcagggcaagaatggagctcct
gcggcaaaaagagcaaagggtgctgggaataagaaggaaggatctagaaagagtgtgagg
atcagtgaatctgtagctgtctttggaggggaggatgacgatgacgagagtgcattgctt
gatgataccgctgtggcagcgtccaatccagacttgaatgccaccttctttgttgaagag
gaagacactgaagttaccgacaagctgaccgaatctggaatgatactcggaggactcaaa
ctcgccacaacactaggcaatgctcccatgcaggtggattacaagaattggtcggcagag
gcacgtgaatcgtttctagatgctgccactgcggctcttgccacttcctccgccttgctc
gctggatgcaaagggcgggatgtggaaactgcactcatttgtcaagaggccgtgtgcagt
ctcgaggtggcactccagtcgtctgtaacgcctgccaaagtggtggtggatccgatggga
gtttcgcccgatgctcctaccaccggaccgttgaaacagcgtaagaagaataaggtgtcg
cccaaggaagactttgcgaataagaagagacttcaggagtcgggtatttacttgttgcgt
ggattgatgcctatcctcaacttgaagatggaggttccgaacggtcaagtgggcaaagtc
gcggcgtataagactgccacctcgcttctcgtgactatcattacttccatctcggaggaa
attcgacacaataccaacaccaaacgtaatactcgcctgtccttgtcatcactggatatg
agtggctctcaaacaccgaaacgtggcggtcgtaaatccatctccttctctcacactccc
ggcaacacgaagggcaaactaggcgctggcatctcacccattgccaacttacaaccaccc
tcactcaaaaagagcatcactccccgccgtacacgcagttctaacaatgttgctctcagt
gaacgaccggcattgcatcctattctgagtctgattatgggaatgttgcacaagttgttc
actaccaaggggctggagagggcggagactcggtcgcgagtgtgtgcccttggtgtattg
tgcttgtctcactttccatcaatggaacgaactcagatgatcaagtttgtaggagacatg
tgcgagtcaaagatatcaagccatcgtatgttgggagtagagttgattggagaaattctc
tgtaccgagtggtattgggaggatgttgccaaagagaataagaagaatggattgattact
ccttttgagaaggacgatgaggagaacaagatggtatcgtcttcgacggtgttgttggct
gcgttgcagggacgattgacggacaagtctcctactgtacggacacgtgctgccatggct
ttgagtgaggtggtacgcaaggccaatgtggcacaggaggagggaatgactcttgatgga
gatgttgagaatactcccatgtctgatgttgccgtgtcttccaaggtactgaacgaagcc
ttgtgcagtatcggaacgggattggtggactcgttgcgaaggagagcgagtacggatgac
agagcaactgttcgcaaggccgccattattgcctggcttcaaatgctttcgcttgcacaa
cgtaagaatcaggctgactttgtcgtgtccaatctggacgtatcagcattgtgtaccctg
tgcaatgatgcttcggttgctacgagaaaggcagctgctgatgcgttgacaaaattagtc
aaggccaattacgacagtgatgagtacactcctcaggcgtctgctcttgaaatggcatgg
gctcataccgtgctcccgttggtgtcggacgtggaggtgacctgtgttaccaaggcagtg
gagttcttttcatccttgatcatagagccaattgtcgagctaggacgcgatactgctgag
aagttgaaggagggtagcagcactcggtatctcgttgcgtggaggattctgtccaaagtc
agtgatagttgcaaagaagcgggaggatcacgaaatggacctggatctctccagactgcg
attcaaaagctgtttgtcaacgctggaaacgattgcaagtcattggcgaagaatctgttg
agggctgtctatcaggttggagccattagtctgtgcctcgatcgtcgtacctcgcaggat
tcgctcatgtcacatgattctgagttggaggatgatctgttcggcatcagaacacaatca
atgaggacgggagcttggtgtttgttggatgcgttgacttcttgccttaccaacaccagt
ggaaagtcttcggttgctgccaacgtgtcgctgtctcaggcagtccgttccagcaacatt
gactcttccttccttgcactttcgttgacaaaacttcgatctctcagcaattccaatgaa
gttccatatgataagagggctggcttggtaacaacatcacgcgattgtcttcgggtcatt
gccagaatgggatcgtttgtgcctcttgacgatgctcgggcttgcttctcggatctgttg
aacgacttggattctttcaacgtgtccattgatctaatttctgctgctgttggtgcactg
gtgtcgctcacgaaacgtctctgtgacgaatcgggaaaagatgtgtatacagagtgtgag
gagtgggtcggccgtctgttgactcattgcgagaacgccatcgagccttcgttctcttca
gtggccaaggaaggaatggtgggggaagatgaggagcagctactactacgagtgctgttc
acggttggagaactcaacatggttggcttcagctcacaggaggaaccggcgaagcaaggg
tcaacgcgaacgaacgacctggctacggaaagggaaccagttcgtggtttatttgtgcga
ccgtcacataagatgcttcagttggtgaagttgatgcttcccaacaccttgccaatgcaa
agttctacggacaatgagatgatgccgacgccatccactattcgcgctcacgccttcatc
acgctgggaaagctctgccttcgcgatcagtctcttgccaaggattgtctcaacattctc
gcacgcgagttacacgaagactcaacatccgatcctgctgtgcagagtaatgctttgatg
gtcatgggagatctgtgtgtcaggtatactaatcttgttgacaagtaccttcctttcatg
gcgtcgtgtcttcaggcaggcgaagggaaagtaccagaggctggatcggaaagtcgcctc
agcatttctttcaacagaaaaatcggtggctattctctcgtaaaaaagaatgcgatccta
cttctgtccagtcttgtgcttcaagactacataaaatggaggggtctctttgtttataga
ttccttgcggcagtggctgatgaagacgacgaagtatcgtgcctggcgcaaacagccatt
cgcggtcttctgttggagaagcagcccaatctcctcgccactagcttcgttgagtctgtc
ttcgtcttgaatagttgcaaggctcatcctatctatgcaacggcagcgtcgattggaggt
tctggatctggagtgtcggttgactttgaaggacgagcatttcttggaggcgaaggatac
caccgacgccacgaggtgtaccgaatgatgctagccaatatgacggacgagcaaaagttg
agagtaacaactgatttggtgaagagggtactcggtggtgcactggaaacgagtggcgat
ctcagtgctgtatgcaagttgtcacctcaagcatcgaccaagataccacgcagtcgagtt
gtatcggcgacacaggtactgaaggatacgcttgcgatccttgcatctcctgacataaaa
gttggacgcagggcaatggaggacaccgaaaacgatgatgatattgcaaacggcaacagt
ggaaagactgagcaaagaagtcgtctcaacaaagagaagttgctatcaaagatcagtcgc
aagcacttgatggaaatcgtcattccggttctttgcaacttgaagtctattatggaggga
agccgctcgccacttctcaaggatctgatgcagtatttggggaaaatctttagatcgttc
aagactgaagtagcagagcatcttgccaacgatcctaccttgttgcaggaactggagtac
gatactcgtatgtgggaaaagaagcagagggaaagccttttgaatgctgaaattgtaact
ggatcatag
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