Thalassiosira pseudonana: THAPSDRAFT_8830
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Entry
THAPSDRAFT_8830 CDS
T01078
Symbol
rfC_1
Name
(RefSeq) replication factor C 37 KD subunit
KO
K10755
replication factor C subunit 2/4
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_8830 (rfC_1)
03410 Base excision repair
THAPSDRAFT_8830 (rfC_1)
03420 Nucleotide excision repair
THAPSDRAFT_8830 (rfC_1)
03430 Mismatch repair
THAPSDRAFT_8830 (rfC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_8830 (rfC_1)
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_8830 (rfC_1)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_8830 (rfC_1)
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
THAPSDRAFT_8830 (rfC_1)
DNA Replication Termination Factors
ELG1-RFC complex
THAPSDRAFT_8830 (rfC_1)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
THAPSDRAFT_8830 (rfC_1)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
THAPSDRAFT_8830 (rfC_1)
Check point factors
HRAD17(Rad24)-RFC complex
THAPSDRAFT_8830 (rfC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
AAA_22
AAA_16
DNA_pol3_delta2
Rad17
AAA_14
Mg_chelatase
RCF1-5-like_lid
KTI12
AAA_5
DNAX_ATPase_lid
nSTAND_NTPase5
AAA_19
RuvB_N
nSTAND3
AAA_30
bpMoxR
AAA_assoc_2
RNA_helicase
AAA_33
MCM
AAA_3
TniB
AAA_11
NTPase_1
AAA_28
AAA_lid_RFC1
AAA_18
IstB_IS21
AAA_7
FtsK_SpoIIIE
Viral_helicase1
AAA_25
MeaB
DUF815
SRP54
AFP_2
NPHP3_N
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
7445395
NCBI-ProteinID:
XP_002296611
JGI:
8830
UniProt:
B8LC61
LinkDB
All DBs
Position
11
Genome browser
AA seq
336 aa
AA seq
DB search
MATAGTKRKTTTAKKYDTPWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPP
GTGKTTSVHALARQLLGSAYSNGVLELNASDSRGIDVVRNKIKGFAMNKVNLPVGRHKII
ILDEADSMTSAAQQALRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQI
LNRLKFVCGEEEVSYDDGGLEAIIFTAEGDMRNALNNIQATVSGFEHVSQTNVFKVCDQP
HPKTVRGILDSCIKGDTTKAVVEVRNLWNTGYSCSDIIGTLFKVAKSYEMPEALKLEYLR
EIGFTHMRIADGVGTLLQLLGLAARLCQKVEVTAKE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcaggaaccaaacgcaaaacaaccaccgccaaaaagtacgacacaccatgg
gtagaaaaatatcgtccccgaaacctagacgacgtggtgggaaacgaagacaccttagta
aggctgagggcgattgccgaggatgggaatatgcccaatttgattttgtgtgggcctcct
ggtacgggcaagaccactagcgtacacgcattggcacgacagcttctcggatcagcctac
tctaatggagttttggagttgaatgcctctgattcgaggggtattgatgttgtgaggaac
aagatcaaggggtttgctatgaataaggtcaatcttcctgtggggagacacaaaatcatc
atcctcgacgaagccgacagcatgaccagcgcagcccaacaagccctccgccgcacgatg
gaaatctactccaacaccacccgcttcgccctcgcatgcaacgtatccaccaaaatcatc
gaaccgattcaatctcgtgctgccattctacgctacagtcgtctaacggatgagcagatt
ttaaacaggttaaagttcgtttgtggagaagaggaggttagttacgatgatggggggttg
gaggctattatattcactgccgagggggatatgaggaatgcattgaacaatatacaagct
accgttagtgggtttgagcatgtcagtcagacgaatgtattcaaggtgtgtgatcagcct
catcccaagactgttagggggatattggacagttgtatcaagggggatacgaccaaggct
gtcgtggaggttagaaacttgtggaatacggggtatagttgtagcgatattattgggacg
ttgttcaaggttgccaagagttatgagatgccagaggctttgaagttggaatatttgagg
gagattgggtttactcatatgaggattgcggatggggttgggacgttgcttcagttgttg
gggttggcggcgaggctttgtcagaaggtggaggttactgcgaaggagtga
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