Thalassiosira pseudonana: THAPSDRAFT_9040
Help
Entry
THAPSDRAFT_9040 CDS
T01078
Name
(RefSeq) histone acetyltransferase gcn5-type hat
KO
K07739
elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:
2.3.1.311
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_9040
Enzymes [BR:
tps01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.311 tRNA carboxymethyluridine synthase
THAPSDRAFT_9040
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
THAPSDRAFT_9040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ELP3_N
Radical_SAM_C
Radical_SAM
Acetyltransf_1
Acetyltransf_10
Acetyltransf_7
Motif
Other DBs
NCBI-GeneID:
7445803
NCBI-ProteinID:
XP_002292996
JGI:
9040
UniProt:
B8CA75
LinkDB
All DBs
Position
12:382821..384794
Genome browser
AA seq
552 aa
AA seq
DB search
MTSSTSYALAISHIVRTLITAYDSSTSLNFTSLKAQAARKYKLSGVPRITDILSSIPVDY
KEKLLPFLRQKPVRTASGVAVVAVMSKPHRCPHIAMTGGVCVYCPGGPDSDFEYSTQAYT
GYEPTSMRAIRARYDPYSQTRGRVAQLRGLGHSVDKVEFIVMGGTFMSLDKSYKDYFIRN
LHDALSGHKSSSVEEAVKYSEHSTIKCIGITIETRPDYCLKPHLSEMLGYGCTRIEIGVQ
SIYESVARETNRGHTVSAVANSFHLAKDCGFKVVTHMMPDLPNTGLERDLTGFSEFFENP
AFRPDGLKLYPTLVIRGTGLYELWKTGRYQNYTPDQLVELTASVMAMVPPWTRVYRIQRD
IPMPLVSSGVEHGNLRELSLARMRDLDLPCKDIRTREVGMKQIQEAVSPDDVELIRRDYV
ANGGWETFLAYEDPEKDILIGLLRLRKASAVAFRPEISEVPSSIVRELHVYGTAVAVSGR
DPTRFQHQGFGMLLMEEAERIAREEHGSEKILVISGVGTRHYYRKMGYELDGPYMSKSLI
LTRSPDYEKVCH
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgacatcctccacctcctacgccctcgcaatctcccacatagtccgaaccctaatcaca
gcctacgactcctccacctctctcaacttcacctccctcaaagcccaagcggcccgcaag
tacaagttgtcaggcgtccctcgcatcactgatattttatcgagtatacccgtggattat
aaggagaagttgttgccctttttgaggcagaagcctgtgaggacggcaagtggagtggcg
gttgtggcggttatgagtaagcctcatcggtgtcctcatattgccatgactggaggagtc
tgcgtctactgccccggaggtcccgattcggacttcgaatattcaactcaagcctacaca
ggctatgaaccgacctccatgcgagccatccgtgcccgctacgatccgtactcccaaacg
cggggtcgagtcgcccaacttcgtggcctaggccattccgtggacaaggttgaattcatc
gtgatgggaggtacgttcatgagtttggataagagttacaaggattacttcattaggaat
ttgcatgatgcgttgagtggtcataagagttcgagtgtggaggaggcggtcaagtattcg
gaacatagtactatcaagtgtattgggattacgattgagactcgaccggattattgtttg
aagcctcatttgagtgagatgctggggtatgggtgtacaaggattgaaattggtgtgcag
agtatatatgagagtgtggctcgtgagacgaatagggggcatactgtgagtgcggtggcg
aattcatttcatctggcgaaggattgtgggtttaaggtggtgactcatatgatgccagac
ttaccgaatacggggttggagagggatttgactggatttagtgagttctttgaaaatcca
gcctttcgtcctgatgggttgaagttgtatccaacactggttattcgaggaactgggctt
tacgagttgtggaagactgggaggtatcagaactatacaccagatcagttagtggaactg
acggcaagtgtaatggctatggtaccaccgtggactagggtgtacaggatccagagagat
attccaatgccgttggttagttctggtgtggagcatggtaatctacgtgagttgagtctg
gctcgtatgcgagacttggatttgccgtgcaaggatatacgaacgcgtgaagtaggaatg
aaacaaatccaggaggctgtgagtccagatgatgtggagctgattaggagagattacgtt
gccaacggaggttgggagactttcttggcgtacgaagatcctgagaaggacattctaatt
ggcttattgagattgcgaaaggcgagtgctgtagcattccgtcctgaaatctcagaggtt
ccatcatcaattgttagagagcttcatgtatacggaacagcagtagcagtctccggtcgc
gatccaactcggtttcagcatcaaggatttggaatgttactcatggaggaggcagaacga
attgcgagggaggagcatgggagcgagaaaatacttgtaatctctggtgtgggtacgaga
cattattacagaaagatggggtacgaactcgatggtccttatatgagcaaatcactgatt
ttgacgcgtagtccagactacgaaaaggtttgccattaa
DBGET
integrated database retrieval system
