Thalassiosira pseudonana: THAPSDRAFT_9108
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Entry
THAPSDRAFT_9108 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_9108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_9108
Spliceosome [BR:
tps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
THAPSDRAFT_9108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
7447555
NCBI-ProteinID:
XP_002293030
JGI:
9108
UniProt:
B8CAE0
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Position
12:553522..555807
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AA seq
761 aa
AA seq
DB search
MNDPPPDNTAQASRRKRRWGGSATPADGGSEGSANDGAAEEASKSTSRFSSSAPAANGAA
NGNGDSSKASADPRARAAALQASIQARLAALKARTAVPTPAVPPATATPAIITSSAAVSD
KKREASGGTEIKPAKKKARVFELDLNETSSTRLLEKQHREEKLRLSEKPKAKVNPYLAHT
VAQPASTDSESKIVLSADTTRVSEEAELLDTRLAGGHIAKLRLKSRPINFVAPGTYVALG
EKKRQQAARAEESGYVSGRKDGRVIQSVGMGGGALVADAAIGGDGSKGGSYYGAGEAGKV
VDEILPARADAPDLTLEDYEIGGKKFKLVKSASANSDKEKQDAAINAAINASESAMPYAM
EWWDAELLPSKLRKELASEEGKAIASRARKQAGLVGGSNADTEKASSPNQQQLIQREKHQ
KLVERCYKHANLSNSKTHALLQHPVPILTPAQKVAALALKNKPPTLHLTKAERKRHRKLR
RAERLREQQDLQAAGLLPAPEPRLTLSNYMKVLGDQAVLDPSKMEARVMEQINQRKIKHE
QMNADRKLTMEQKAQKHARKLAEDTSASVKVALFWVRDMSHPYHRAKVDLNAQQNSITGG
VLECERPTIAGGGGGDEPVVLVVAEGGEKAIKRYTRLMVVRMRWKGEDFYEEDEEGEDLM
VGENDDGEDPQPKKERKKFNPNNECELIWTGMAVKRAFHSFMFQSASNPTVARKILEAKG
VAHYWDLAMGHVAMKEGRGIVGGGEGLRFRLGYDDSDTMED
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcctcctccggacaacacagcgcaagcgtcacgccgcaaaaggcgttggggc
ggctctgctacacccgctgatggtggtagtgaaggaagtgcgaacgacggcgctgcagaa
gaggcttcgaagagtacgagccgcttctcctcgtcggcccctgccgccaacggggctgcc
aacggaaacggtgactctagcaaggcatctgctgatccaagagcaagggcagcggcgttg
caagcatcaattcaggctcgccttgctgctctcaaggcgcgaaccgcagtgccaacgccg
gccgtacctcctgccactgccacaccagccatcatcacgtcgtcggctgctgtgagtgat
aaaaagcgagaggcctccggaggcactgagataaagccagcaaaaaagaaggcacgtgtt
tttgagctggatttgaatgagacgtcctccacgcggctactagaaaagcaacaccgtgag
gagaagctgagattgtctgagaagccgaaggcgaaggtcaatccatatctggctcatacg
gtagctcagccggcttccactgattcagaatcaaagatcgtgctatctgcggacacgacg
cgagtatctgaggaggcagagcttcttgacacgcgtttggcaggggggcacattgcgaag
ctacgtctcaaatctaggccaataaactttgtcgctcctggaacatacgttgcactgggc
gaaaagaaacgtcaacaggctgcccgtgccgaggaaagtgggtatgtgagcggtaggaag
gatgggagggtgatccaaagtgttggaatggggggcggggcattagttgctgatgcagct
attggtggggatggtagcaaaggtggcagttactatggagcgggcgaggcaggaaaagtg
gtggatgaaatactgcctgcgagagcggatgctccagatctgacgttggaggattatgag
atcggtgggaagaaatttaaactggtcaaatcggcatcagctaactcggacaaggagaaa
caggacgcggcaatcaacgcagcaatcaacgcatcggagtctgcaatgccttatgcaatg
gaatggtgggatgcagaattattaccttcgaagctacgtaaagagttggcgtctgaagag
ggcaaggcaatcgcatcacgagcaagaaagcaagcggggctagtggggggttctaacgct
gatacggaaaaggcgtcgtccccaaatcaacaacaacttattcaaagagagaagcaccaa
aaactcgttgaacggtgctacaagcatgccaatctcagcaattccaaaacgcacgctcta
ctacaacacccggtgcccatcctcacccccgcccaaaaggttgctgctttagcactgaaa
aataagcctccgactcttcacctcaccaaagctgaacgtaagcgacatcgcaaactccgt
cgtgcagaacgtctgcgcgagcaacaggatttgcaagctgctggacttttgcctgctcca
gaaccacgcctaactctctcaaactatatgaaagtgcttggcgatcaggcagtattggac
ccgtctaaaatggaagctcgggtcatggaacagattaatcaacgcaaaatcaaacatgaa
caaatgaatgctgatcgtaagctgacaatggaacaaaaggcccaaaagcacgctaggaaa
ctggcagaggacacgtcggcctctgtaaaggtagcattgttttgggtgcgtgacatgagc
catccgtatcatcgagccaaggttgatttgaatgctcaacagaacagtatcactgggggt
gttttggagtgtgaaagaccaacaattgcgggaggtggaggaggcgatgagcctgttgtc
ttggtcgttgccgagggcggggagaaggctatcaaacgctatacccgactcatggttgtt
cgtatgaggtggaaaggagaggacttctatgaggaagatgaggaaggagaagatctcatg
gtgggtgaaaatgacgacggggaagacccacaaccaaagaaagaacggaagaagttcaac
cccaacaatgaatgcgaactgatctggactggtatggcagtgaaacgtgcttttcattcc
ttcatgtttcagtcagcgtcgaaccctaccgtggcaagaaagattttggaagcaaagggt
gtagcacattattgggatttggcaatggggcacgtggcgatgaaagagggtagaggaatt
gttggtggcggcgaaggattgaggttcaggttgggatacgacgatagtgacacgatggaa
gattga
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