Thalassiosira pseudonana: THAPSDRAFT_9716
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Entry
THAPSDRAFT_9716 CDS
T01078
Name
(RefSeq) eukaryotic translation initiation factor 4A
KO
K03257
translation initiation factor 4A
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_9716
03012 Translation factors [BR:
tps03012
]
THAPSDRAFT_9716
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_9716
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
THAPSDRAFT_9716
mRNA cycle factors
Stress granule specific factors
THAPSDRAFT_9716
Translation factors [BR:
tps03012
]
Eukaryotic type
Initiation factors
eIF-4
THAPSDRAFT_9716
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
THAPSDRAFT_9716
Exosomal proteins of bladder cancer cells
THAPSDRAFT_9716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
7451640
NCBI-ProteinID:
XP_002293690
JGI:
9716
UniProt:
B8CC33
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All DBs
Position
14:174493..175875
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AA seq
369 aa
AA seq
DB search
MEIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIGTLAKLDP
KLRECQSLILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGVHVVVG
TPGRVYDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLFSATMP
LDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTITQAII
YCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGID
VQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEGDVRYLRDIEQFYQTEITE
MPMNVADLI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggagatccccgaagaactcttgagggggatctacgcctatggatttgagaagcctagt
gctattcagcagagggctattaaacctaccatgttgggaagggatctgattgctcaggct
cagtctggaacgggtaaaaccgccaccttcgccatcggaaccctcgccaaacttgacccc
aaactccgcgaatgccaatccctcatcctcgcacccactcgtgagctcgcccaacaaatc
caaaaggtcgttattgccctcggagactacatggaactccaagtccatgcctgcgtcgga
ggtaccgccgtccgtgatgacattcgtactcttcagggaggagtgcatgttgtggttgga
actcctgggcgtgtttatgatatgattaacaggagggctttgaggttggatagcatcagg
cagttctttttggatgaggctgatgagatgctttctcgtgggttcaaggatcagatttat
gatatttttaagttccttcctgaatcggtgcaagtgtgccttttctcggctaccatgccc
ttggatgtgttggaggtcactcaacgtttcatgagggatcctgtcaggatcctcgtcaag
aaggatgagttgacccttgagggtatcaagcaattctacattgctgtggagagggaggag
tggaagctcgacactctttgtgatttgtacgagactctcaccatcacccaggccattatc
tactgcaacacccgtcgcaaggtcgattggctgcaggagcagatgcaagagcgtgacttc
accgtctcgtgcatgcatggagatatggaccagcgtgaacgtgatatcatcatgcgtgag
ttccgttctggatcgtcccgcgttctcatcaccaccgatcttttggcccgtggtattgat
gtgcagcaggtttctcttgtgattaactttgacttgcccaccaaccgtgagaactacatc
catcgtattggtcgatctggacgtttcgggcgtaagggtgtggctatcaacttcttgacc
gaaggtgatgttcgttatctccgtgatattgagcagttctaccagactgagattactgag
atgccaatgaacgttgctgatcttatctaa
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