Thalassiosira pseudonana: THAPSDRAFT_bd1193
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Entry
THAPSDRAFT_bd1193 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_bd1193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_bd1193
Spliceosome [BR:
tps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
THAPSDRAFT_bd1193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
7447681
NCBI-ProteinID:
XP_002297362
JGI:
bd1193
UniProt:
B8LEB3
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MTSTNSTACPYLDTINRTHLDFDFSPHCSSTLESSPHIYACLVCGKFFRGKGRQTPAYTH
SVEEGHFVFVHLSNGTFWCLPDGYEISTKEEPSLSDISLALNPSFTSEEVGRLDDNQELA
RDLFGRRYLPGFVGLNNLNKTDYLNCVVQALAHVRPLRDFFLLAGSQTSHQPLSYANFSP
LAKAFSLLLRNMWSSHRFKSNVDPHMLVQAVSVASNKRYHVGKQAEAGDFLAWLLHQLHV
GIGGSVGKKKRSSGGSTVIHQTFMGKVETVARKQLKRETLTSLASETVIVEESTVTETDF
LQLTLDIPEKPLFKDADGGLVIPQEPLVNVLRKFDGVSFCDALALQKSEEASASNTVDGG
SVVVSKKRRYRLKKLPNYLILHLSRFKHNNFTVEKNPTIVMFPVKNFDLNKYDLVANITH
DLPAEVGREGKQRNPLEEGSYRCHVQHKATGQWYEIQDLDVRETMPQLIGVSESYLLIFE
RKGATKS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaccaacagcaccgcctgcccgtacctcgacaccatcaaccgcacccatctc
gactttgacttctccccccactgctccagcacgctcgagtcgtccccccacatctacgcc
tgtctcgtctgcggcaaattctttcgcggcaaggggcgccagactcccgcgtacacccac
tccgtcgaagaggggcattttgtgtttgtccatttgagcaatgggacgttttggtgtctg
ccggacgggtacgagatttctacgaaggaggagccgagcttgagcgacatttcgttggcg
ctgaatccgtcgttcacgagcgaggaggtggggaggctggacgacaatcaggagctggcc
agggatttgtttgggaggcgctatctgccgggatttgtggggctgaataacctgaacaag
acggattatttgaattgcgtggtgcaggcgttggcgcatgtcaggccgctgagggatttc
ttcttgttggctgggagtcaaacgtcccatcaacctctctcctacgccaacttttctcca
ttggccaaagcattctcactccttcttcgcaacatgtggtcttcccatagattcaagtcg
aatgttgatccacacatgctcgttcaagccgtctcagtagcttccaataaacgatatcac
gtggggaaacaagccgaggctggtgactttctagcgtggttgttgcatcaacttcatgtg
gggattggagggtcggttggaaagaaaaagaggagcagtggaggaagtactgtaattcat
caaacgtttatgggcaaagtggaaacggtggcacgaaagcaactaaaacgcgaaacactc
acgtcacttgcctctgaaacagtcattgtggaagaatctaccgttactgaaactgatttc
ttacaattaacgttggatattcccgaaaagcctctcttcaaagatgctgatggaggattg
gtcattccacaggagccattggtcaatgtgttgagaaagtttgatggtgtttccttctgt
gacgctttggctttgcaaaagtcagaagaagctagtgcaagcaacactgttgatggaggg
agcgtggtagtctccaagaaacgacgataccgactcaaaaagctacccaactacctcatt
ctgcatctgagtcggttcaaacacaacaacttcacagtagagaagaatccaactattgtc
atgttccccgtgaagaattttgacttgaacaaatacgatctcgttgcgaacattacacac
gatctgccagccgaggtgggaagggaggggaagcaacgcaatccgttggaggaggggagt
tatcgttgtcacgtgcagcataaggctacggggcagtggtatgagattcaagatttggat
gtgagggaaacgatgcctcagttgattggtgttagtgagagttatttgttgatctttgag
aggaagggggctacaaagtcatga
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