Thalassiosira pseudonana: THAPS_10869
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Entry
THAPS_10869 CDS
T01078
Name
(RefSeq) predicted protein
KO
K25592
U7 snRNA-associated Sm-like protein LSm11
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPS_10869
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
THAPS_10869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
7444262
NCBI-ProteinID:
XP_002295561
JGI:
10869
UniProt:
B5YLR2
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Position
18:complement(340469..341796)
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AA seq
414 aa
AA seq
DB search
MSTKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVEGETRL
ANKLSKKYGNQVTLLVAPPHRSMRQNQGDVSSVSAVKKYDEKHYEEDGERLGSKVVDFTS
PKFDALYALVVAPERSVITANPTILFTDATTLNTKLDNISKFRPLLPNCDPLRLDPIINK
KSQKKHHVPKQPTAEEATKKKPPMFLAMASKYEHKNSGPLSLLYSILANRQRVRVMVRYV
DCVRGTLTGYLIAFDKHFNMILKDVDEVYSGRVTRNAEAVEFAGSTEQPTLKGSLLGTTN
DEHDNYNSHHGPSKAVLESQRRKCYPTDGSGGPGPAVKQRYFHQLLVRGDNVVMVWRAES
ERSSHPRTSKSPSHSKYDEKAQKSSCMNGGGVGTPGSLYYALQRWDQNQKRPPR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaaatcacatcctccatcagtgagtctcggcaaaccgtccctccgctaccgc
cttgaatcctactacagcctcatcgcaccagatgccatcgccgacaaagaagactggaaa
cgaaagttcgaaatcatctacaacaagtttggtggatcggtggagggagagactaggctg
gcgaataagctatcgaaaaagtatggcaatcaggtgacgttgttggttgcgcctccacat
cggtccatgaggcagaatcaaggagatgtgagtagtgtctctgccgtaaagaagtacgat
gaaaaacattacgaggaggatggtgaacgattgggcagcaaagtggtggactttacgtca
cctaagtttgatgcactctacgcactggtggttgcacccgaacgatcagtcatcaccgca
aacccaacaatattattcaccgatgcaacaaccctaaatacaaagctcgacaacatatcc
aagttccgtccactactcccaaattgcgaccctctacgtttggatccaatcatcaacaaa
aagtcccaaaagaaacatcacgtacccaaacaacctaccgcagaagaagctacaaagaag
aaacctccaatgttcctcgctatggcatccaaatacgaacacaaaaactcgggaccgcta
tcattactctactctattttggctaaccgacaacgtgtacgtgtcatggtccgatatgtc
gattgtgtacgaggtacactgacggggtatttgattgcctttgataaacacttcaacatg
atcttgaaggacgtagacgaagtctacagtggtagagttacgaggaacgcagaggctgta
gagtttgcagggagtaccgaacaaccgacactaaaaggttcacttcttggtacaacaaac
gacgaacacgacaactacaactcacaccatggtccatccaaagcagtgctagaatctcaa
aggagaaagtgctaccccaccgatggcagcggaggaccaggaccagccgtcaaacaacgt
tacttccatcaactattggtacgaggagacaatgtcgtcatggtttggagagcagagagt
gaacgatcgtcacatcctcgtactagtaagagtccttctcattccaagtacgacgagaaa
gctcaaaagtcaagttgtatgaatggcggtggggtaggaactccgggctcgttgtattat
gcactacagcgttgggatcagaaccagaagaggccacctcgttga
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